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Nucleosome-driven transcription factor binding and gene regulation.
Mol Cell. 2013 Jan 10;49(1):67-79. doi: 10.1016/j.molcel.2012.10.019. Epub 2012 Nov 21.
Mol Cell. 2013.
PMID: 23177737
Free article.
Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data.
Althammer S, González-Vallinas J, Ballaré C, Beato M, Eyras E.
Althammer S, et al. Among authors: gonzalez vallinas j.
Bioinformatics. 2011 Dec 15;27(24):3333-40. doi: 10.1093/bioinformatics/btr570. Epub 2011 Oct 12.
Bioinformatics. 2011.
PMID: 21994224
Free PMC article.
Item in Clipboard
Use of ChIP-Seq data for the design of a multiple promoter-alignment method.
Erb I, González-Vallinas JR, Bussotti G, Blanco E, Eyras E, Notredame C.
Erb I, et al. Among authors: gonzalez vallinas jr.
Nucleic Acids Res. 2012 Apr;40(7):e52. doi: 10.1093/nar/gkr1292. Epub 2012 Jan 9.
Nucleic Acids Res. 2012.
PMID: 22230796
Free PMC article.
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A semi-supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells.
González-Vallinas J, Pagès A, Singh B, Eyras E.
González-Vallinas J, et al.
BMC Genomics. 2015 Jul 14;16(1):523. doi: 10.1186/s12864-015-1704-0.
BMC Genomics. 2015.
PMID: 26169177
Free PMC article.
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Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling.
Nadal-Ribelles M, Conde N, Flores O, González-Vallinas J, Eyras E, Orozco M, de Nadal E, Posas F.
Nadal-Ribelles M, et al. Among authors: gonzalez vallinas j.
Genome Biol. 2012 Nov 18;13(11):R106. doi: 10.1186/gb-2012-13-11-r106.
Genome Biol. 2012.
PMID: 23158682
Free PMC article.
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Preferential binding of a stable G3BP ribonucleoprotein complex to intron-retaining transcripts in mouse brain and modulation of their expression in the cerebellum.
Martin S, Bellora N, González-Vallinas J, Irimia M, Chebli K, de Toledo M, Raabe M, Eyras E, Urlaub H, Blencowe BJ, Tazi J.
Martin S, et al. Among authors: gonzalez vallinas j.
J Neurochem. 2016 Nov;139(3):349-368. doi: 10.1111/jnc.13768. Epub 2016 Oct 18.
J Neurochem. 2016.
PMID: 27513819
Free article.
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A new view of transcriptome complexity and regulation through the lens of local splicing variations.
Vaquero-Garcia J, Barrera A, Gazzara MR, González-Vallinas J, Lahens NF, Hogenesch JB, Lynch KW, Barash Y.
Vaquero-Garcia J, et al. Among authors: gonzalez vallinas j.
Elife. 2016 Feb 1;5:e11752. doi: 10.7554/eLife.11752.
Elife. 2016.
PMID: 26829591
Free PMC article.
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AVISPA: a web tool for the prediction and analysis of alternative splicing.
Barash Y, Vaquero-Garcia J, González-Vallinas J, Xiong HY, Gao W, Lee LJ, Frey BJ.
Barash Y, et al. Among authors: gonzalez vallinas j.
Genome Biol. 2013;14(10):R114. doi: 10.1186/gb-2013-14-10-r114.
Genome Biol. 2013.
PMID: 24156756
Free PMC article.
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