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CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content.
Borry M, Cordova B, Perri A, Wibowo M, Prasad Honap T, Ko J, Yu J, Britton K, Girdland-Flink L, Power RC, Stuijts I, Salazar-García DC, Hofman C, Hagan R, Samdapawindé Kagoné T, Meda N, Carabin H, Jacobson D, Reinhard K, Lewis C, Kostic A, Jeong C, Herbig A, Hübner A, Warinner C. Borry M, et al. Among authors: hubner a. PeerJ. 2020 Apr 17;8:e9001. doi: 10.7717/peerj.9001. eCollection 2020. PeerJ. 2020. PMID: 32337106 Free PMC article.
Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir.
Fellows Yates JA, Andrades Valtueña A, Vågene ÅJ, Cribdon B, Velsko IM, Borry M, Bravo-Lopez MJ, Fernandez-Guerra A, Green EJ, Ramachandran SL, Heintzman PD, Spyrou MA, Hübner A, Gancz AS, Hider J, Allshouse AF, Zaro V, Warinner C. Fellows Yates JA, et al. Among authors: hubner a. Sci Data. 2021 Jan 26;8(1):31. doi: 10.1038/s41597-021-00816-y. Sci Data. 2021. PMID: 33500403 Free PMC article.
Reconstruction of ancient microbial genomes from the human gut.
Wibowo MC, Yang Z, Borry M, Hübner A, Huang KD, Tierney BT, Zimmerman S, Barajas-Olmos F, Contreras-Cubas C, García-Ortiz H, Martínez-Hernández A, Luber JM, Kirstahler P, Blohm T, Smiley FE, Arnold R, Ballal SA, Pamp SJ, Russ J, Maixner F, Rota-Stabelli O, Segata N, Reinhard K, Orozco L, Warinner C, Snow M, LeBlanc S, Kostic AD. Wibowo MC, et al. Among authors: hubner a. Nature. 2021 Jun;594(7862):234-239. doi: 10.1038/s41586-021-03532-0. Epub 2021 May 12. Nature. 2021. PMID: 33981035 Free PMC article.
Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic.
Klapper M, Hübner A, Ibrahim A, Wasmuth I, Borry M, Haensch VG, Zhang S, Al-Jammal WK, Suma H, Fellows Yates JA, Frangenberg J, Velsko IM, Chowdhury S, Herbst R, Bratovanov EV, Dahse HM, Horch T, Hertweck C, González Morales MR, Straus LG, Vilotijevic I, Warinner C, Stallforth P. Klapper M, et al. Among authors: hubner a. Science. 2023 May 12;380(6645):619-624. doi: 10.1126/science.adf5300. Epub 2023 May 4. Science. 2023. PMID: 37141315
A glimpse of the paleome in endolithic microbial communities.
Wegner CE, Stahl R, Velsko I, Hübner A, Fagernäs Z, Warinner C, Lehmann R, Ritschel T, Totsche KU, Küsel K. Wegner CE, et al. Among authors: hubner a. Microbiome. 2023 Sep 25;11(1):210. doi: 10.1186/s40168-023-01647-2. Microbiome. 2023. PMID: 37749660 Free PMC article.
Stone Age Yersinia pestis genomes shed light on the early evolution, diversity, and ecology of plague.
Andrades Valtueña A, Neumann GU, Spyrou MA, Musralina L, Aron F, Beisenov A, Belinskiy AB, Bos KI, Buzhilova A, Conrad M, Djansugurova LB, Dobeš M, Ernée M, Fernández-Eraso J, Frohlich B, Furmanek M, Hałuszko A, Hansen S, Harney É, Hiss AN, Hübner A, Key FM, Khussainova E, Kitov E, Kitova AO, Knipper C, Kühnert D, Lalueza-Fox C, Littleton J, Massy K, Mittnik A, Mujika-Alustiza JA, Olalde I, Papac L, Penske S, Peška J, Pinhasi R, Reich D, Reinhold S, Stahl R, Stäuble H, Tukhbatova RI, Vasilyev S, Veselovskaya E, Warinner C, Stockhammer PW, Haak W, Krause J, Herbig A. Andrades Valtueña A, et al. Among authors: hubner a. Proc Natl Acad Sci U S A. 2022 Apr 26;119(17):e2116722119. doi: 10.1073/pnas.2116722119. Epub 2022 Apr 11. Proc Natl Acad Sci U S A. 2022. PMID: 35412864 Free PMC article.
Genetic structure and sex-biased gene flow in the history of southern African populations.
Bajić V, Barbieri C, Hübner A, Güldemann T, Naumann C, Gerlach L, Berthold F, Nakagawa H, Mpoloka SW, Roewer L, Purps J, Stoneking M, Pakendorf B. Bajić V, et al. Among authors: hubner a. Am J Phys Anthropol. 2018 Nov;167(3):656-671. doi: 10.1002/ajpa.23694. Epub 2018 Sep 7. Am J Phys Anthropol. 2018. PMID: 30192370 Free PMC article.
197 results