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Standardization of assay representation in the Ontology for Biomedical Investigations.
Database (Oxford). 2021 Jul 9;2021:baab040. doi: 10.1093/database/baab040.
Database (Oxford). 2021.
PMID: 34244718
Free PMC article.
Review.
ClinEpiDB: an open-access clinical epidemiology database resource encouraging online exploration of complex studies.
Ruhamyankaka E, Brunk BP, Dorsey G, Harb OS, Helb DA, Judkins J, Kissinger JC, Lindsay B, Roos DS, San EJ, Stoeckert CJ, Zheng J, Tomko SS.
Ruhamyankaka E, et al.
Gates Open Res. 2020 Apr 6;3:1661. doi: 10.12688/gatesopenres.13087.2. eCollection 2019.
Gates Open Res. 2020.
PMID: 32047873
Free PMC article.
Item in Clipboard
FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes.
Basenko EY, Pulman JA, Shanmugasundram A, Harb OS, Crouch K, Starns D, Warrenfeltz S, Aurrecoechea C, Stoeckert CJ Jr, Kissinger JC, Roos DS, Hertz-Fowler C.
Basenko EY, et al.
J Fungi (Basel). 2018 Mar 20;4(1):39. doi: 10.3390/jof4010039.
J Fungi (Basel). 2018.
PMID: 30152809
Free PMC article.
Item in Clipboard
EuPathDB: the eukaryotic pathogen genomics database resource.
Aurrecoechea C, Barreto A, Basenko EY, Brestelli J, Brunk BP, Cade S, Crouch K, Doherty R, Falke D, Fischer S, Gajria B, Harb OS, Heiges M, Hertz-Fowler C, Hu S, Iodice J, Kissinger JC, Lawrence C, Li W, Pinney DF, Pulman JA, Roos DS, Shanmugasundram A, Silva-Franco F, Steinbiss S, Stoeckert CJ Jr, Spruill D, Wang H, Warrenfeltz S, Zheng J.
Aurrecoechea C, et al.
Nucleic Acids Res. 2017 Jan 4;45(D1):D581-D591. doi: 10.1093/nar/gkw1105. Epub 2016 Nov 29.
Nucleic Acids Res. 2017.
PMID: 27903906
Free PMC article.
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The Ontology for Biomedical Investigations.
Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, Haendel MA, He Y, Heiskanen M, Hernandez-Boussard T, Jensen M, Lin Y, Lister AL, Lord P, Malone J, Manduchi E, McGee M, Morrison N, Overton JA, Parkinson H, Peters B, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Schober D, Smith B, Soldatova LN, Stoeckert CJ Jr, Taylor CF, Torniai C, Turner JA, Vita R, Whetzel PL, Zheng J.
Bandrowski A, et al.
PLoS One. 2016 Apr 29;11(4):e0154556. doi: 10.1371/journal.pone.0154556. eCollection 2016.
PLoS One. 2016.
PMID: 27128319
Free PMC article.
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Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes.
Lorenzi H, Khan A, Behnke MS, Namasivayam S, Swapna LS, Hadjithomas M, Karamycheva S, Pinney D, Brunk BP, Ajioka JW, Ajzenberg D, Boothroyd JC, Boyle JP, Dardé ML, Diaz-Miranda MA, Dubey JP, Fritz HM, Gennari SM, Gregory BD, Kim K, Saeij JP, Su C, White MW, Zhu XQ, Howe DK, Rosenthal BM, Grigg ME, Parkinson J, Liu L, Kissinger JC, Roos DS, Sibley LD.
Lorenzi H, et al.
Nat Commun. 2016 Jan 7;7:10147. doi: 10.1038/ncomms10147.
Nat Commun. 2016.
PMID: 26738725
Free PMC article.
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The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites.
Harb OS, Roos DS.
Harb OS, et al.
Methods Mol Biol. 2015;1201:1-18. doi: 10.1007/978-1-4939-1438-8_1.
Methods Mol Biol. 2015.
PMID: 25388105
Free PMC article.
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