Hafner A - Search Results

1

p53 pulses lead to distinct patterns of gene expression albeit similar DNA-binding dynamics.

Hafner A, Stewart-Ornstein J, Purvis JE, Forrester WC, Bulyk ML, Lahav G. Hafner A, et al. Nat Struct Mol Biol. 2017 Oct;24(10):840-847. doi: 10.1038/nsmb.3452. Epub 2017 Aug 21. Nat Struct Mol Biol. 2017. PMID: 28825732 Free PMC article.

2

The multiple mechanisms that regulate p53 activity and cell fate.

Hafner A, Bulyk ML, Jambhekar A, Lahav G. Hafner A, et al. Nat Rev Mol Cell Biol. 2019 Apr;20(4):199-210. doi: 10.1038/s41580-019-0110-x. Nat Rev Mol Cell Biol. 2019. PMID: 30824861 Review.

3

Visualizing DNA folding and RNA in embryos at single-cell resolution.

Mateo LJ, Murphy SE, Hafner A, Cinquini IS, Walker CA, Boettiger AN. Mateo LJ, et al. Among authors: hafner a. Nature. 2019 Apr;568(7750):49-54. doi: 10.1038/s41586-019-1035-4. Epub 2019 Mar 18. Nature. 2019. PMID: 30886393 Free PMC article.

4

A Comprehensive Drosophila melanogaster Transcription Factor Interactome.

Shokri L, Inukai S, Hafner A, Weinand K, Hens K, Vedenko A, Gisselbrecht SS, Dainese R, Bischof J, Furger E, Feuz JD, Basler K, Deplancke B, Bulyk ML. Shokri L, et al. Among authors: hafner a. Cell Rep. 2019 Apr 16;27(3):955-970.e7. doi: 10.1016/j.celrep.2019.03.071. Cell Rep. 2019. PMID: 30995488 Free PMC article.

5

Identification of universal and cell-type specific p53 DNA binding.

Hafner A, Kublo L, Tsabar M, Lahav G, Stewart-Ornstein J. Hafner A, et al. BMC Mol Cell Biol. 2020 Feb 18;21(1):5. doi: 10.1186/s12860-020-00251-8. BMC Mol Cell Biol. 2020. PMID: 32070277 Free PMC article.

6

Quantifying the Central Dogma in the p53 Pathway in Live Single Cells.

Hafner A, Reyes J, Stewart-Ornstein J, Tsabar M, Jambhekar A, Lahav G. Hafner A, et al. Cell Syst. 2020 Jun 24;10(6):495-505.e4. doi: 10.1016/j.cels.2020.05.001. Epub 2020 Jun 12. Cell Syst. 2020. PMID: 32533938 Free PMC article.

7

mSWI/SNF promotes Polycomb repression both directly and through genome-wide redistribution.

Weber CM, Hafner A, Kirkland JG, Braun SMG, Stanton BZ, Boettiger AN, Crabtree GR. Weber CM, et al. Among authors: hafner a. Nat Struct Mol Biol. 2021 Jun;28(6):501-511. doi: 10.1038/s41594-021-00604-7. Epub 2021 Jun 11. Nat Struct Mol Biol. 2021. PMID: 34117481 Free PMC article.

8

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data.

Lee L, Yu H, Jia BB, Jussila A, Zhu C, Chen J, Xie L, Hafner A, Mishra S, Wang DD, Strambio-De-Castillia C, Boettiger A, Ren B, Li Y, Hu M. Lee L, et al. Among authors: hafner a. Nat Commun. 2023 Aug 12;14(1):4873. doi: 10.1038/s41467-023-40658-3. Nat Commun. 2023. PMID: 37573342 Free PMC article.

9

A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation.

Llimos G, Gardeux V, Koch U, Kribelbauer JF, Hafner A, Alpern D, Pezoldt J, Litovchenko M, Russeil J, Dainese R, Moia R, Mahmoud AM, Rossi D, Gaidano G, Plass C, Lutsik P, Gerhauser C, Waszak SM, Boettiger A, Radtke F, Deplancke B. Llimos G, et al. Among authors: hafner a. Nat Commun. 2022 Apr 19;13(1):2042. doi: 10.1038/s41467-022-29625-6. Nat Commun. 2022. PMID: 35440565 Free PMC article.

10

How subtle changes in 3D structure can create large changes in transcription.

Xiao JY, Hafner A, Boettiger AN. Xiao JY, et al. Among authors: hafner a. Elife. 2021 Jul 9;10:e64320. doi: 10.7554/eLife.64320. Elife. 2021. PMID: 34240703 Free PMC article.

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