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AliBaba: PubMed as a graph.
Plake C, Schiemann T, Pankalla M, Hakenberg J, Leser U. Plake C, et al. Among authors: hakenberg j. Bioinformatics. 2006 Oct 1;22(19):2444-5. doi: 10.1093/bioinformatics/btl408. Epub 2006 Jul 26. Bioinformatics. 2006. PMID: 16870931
SETH detects and normalizes genetic variants in text.
Thomas P, Rocktäschel T, Hakenberg J, Lichtblau Y, Leser U. Thomas P, et al. Among authors: hakenberg j. Bioinformatics. 2016 Sep 15;32(18):2883-5. doi: 10.1093/bioinformatics/btw234. Epub 2016 Jun 2. Bioinformatics. 2016. PMID: 27256315
Finding kinetic parameters using text mining.
Hakenberg J, Schmeier S, Kowald A, Klipp E, Leser U. Hakenberg J, et al. OMICS. 2004 Summer;8(2):131-52. doi: 10.1089/1536231041388366. OMICS. 2004. PMID: 15268772
Systematic feature evaluation for gene name recognition.
Hakenberg J, Bickel S, Plake C, Brefeld U, Zahn H, Faulstich L, Leser U, Scheffer T. Hakenberg J, et al. BMC Bioinformatics. 2005;6 Suppl 1(Suppl 1):S9. doi: 10.1186/1471-2105-6-S1-S9. Epub 2005 May 24. BMC Bioinformatics. 2005. PMID: 15960843 Free PMC article.
Inter-species normalization of gene mentions with GNAT.
Hakenberg J, Plake C, Leaman R, Schroeder M, Gonzalez G. Hakenberg J, et al. Bioinformatics. 2008 Aug 15;24(16):i126-132. doi: 10.1093/bioinformatics/btn299. Bioinformatics. 2008. PMID: 18689813
The GNAT library for local and remote gene mention normalization.
Hakenberg J, Gerner M, Haeussler M, Solt I, Plake C, Schroeder M, Gonzalez G, Nenadic G, Bergman CM. Hakenberg J, et al. Bioinformatics. 2011 Oct 1;27(19):2769-71. doi: 10.1093/bioinformatics/btr455. Epub 2011 Aug 3. Bioinformatics. 2011. PMID: 21813477 Free PMC article.
GoGene: gene annotation in the fast lane.
Plake C, Royer L, Winnenburg R, Hakenberg J, Schroeder M. Plake C, et al. Among authors: hakenberg j. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W300-4. doi: 10.1093/nar/gkp429. Epub 2009 May 22. Nucleic Acids Res. 2009. PMID: 19465383 Free PMC article.
32 results