Hogrebe A - Search Results

1

Coisolation of Peptide Pairs for Peptide Identification and MS/MS-Based Quantification.

Smith IR, Eng JK, Barente AS, Hogrebe A, Llovet A, Rodriguez-Mias RA, Villén J. Smith IR, et al. Among authors: hogrebe a. Anal Chem. 2022 Nov 8;94(44):15198-15206. doi: 10.1021/acs.analchem.2c01711. Epub 2022 Oct 28. Anal Chem. 2022. PMID: 36306373 Free PMC article.

2

IsobaricQuant enables cross-platform quantification, visualization, and filtering of isobarically-labeled peptides.

Hogrebe A, Hess KN, Llovet A, Ramos YJ, Barente AS, Hernandez-Portugues D, Smith IR, Rodríguez-Mias RA, Villén J. Hogrebe A, et al. Proteomics. 2022 Oct;22(19-20):e2100253. doi: 10.1002/pmic.202100253. Epub 2022 Jul 11. Proteomics. 2022. PMID: 35776068 Free PMC article.

3

Data Processing and Analysis for DIA-Based Phosphoproteomics Using Spectronaut.

Martinez-Val A, Bekker-Jensen DB, Hogrebe A, Olsen JV. Martinez-Val A, et al. Among authors: hogrebe a. Methods Mol Biol. 2021;2361:95-107. doi: 10.1007/978-1-0716-1641-3_6. Methods Mol Biol. 2021. PMID: 34236657

4

Benchmarking common quantification strategies for large-scale phosphoproteomics.

Hogrebe A, von Stechow L, Bekker-Jensen DB, Weinert BT, Kelstrup CD, Olsen JV. Hogrebe A, et al. Nat Commun. 2018 Mar 13;9(1):1045. doi: 10.1038/s41467-018-03309-6. Nat Commun. 2018. PMID: 29535314 Free PMC article.

5

Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries.

Bekker-Jensen DB, Bernhardt OM, Hogrebe A, Martinez-Val A, Verbeke L, Gandhi T, Kelstrup CD, Reiter L, Olsen JV. Bekker-Jensen DB, et al. Among authors: hogrebe a. Nat Commun. 2020 Feb 7;11(1):787. doi: 10.1038/s41467-020-14609-1. Nat Commun. 2020. PMID: 32034161 Free PMC article.

6

Performance Evaluation of the Q Exactive HF-X for Shotgun Proteomics.

Kelstrup CD, Bekker-Jensen DB, Arrey TN, Hogrebe A, Harder A, Olsen JV. Kelstrup CD, et al. Among authors: hogrebe a. J Proteome Res. 2018 Jan 5;17(1):727-738. doi: 10.1021/acs.jproteome.7b00602. Epub 2017 Dec 20. J Proteome Res. 2018. PMID: 29183128

7

Sweet google O' mine-The importance of online search engines for MS-facilitated, database-independent identification of peptide-encoded book prefaces: A EUPA YPIC challenge entry.

Hogrebe A, Jersie-Christensen RR. Hogrebe A, et al. EuPA Open Proteom. 2019 Oct 6;22-23:14-18. doi: 10.1016/j.euprot.2019.07.012. eCollection 2019 Mar. EuPA Open Proteom. 2019. PMID: 31890548 Free PMC article.

8

The fitness cost of spurious phosphorylation.

Bradley D, Hogrebe A, Dandage R, Dubé AK, Leutert M, Dionne U, Chang A, Villén J, Landry CR. Bradley D, et al. Among authors: hogrebe a. bioRxiv [Preprint]. 2023 Oct 10:2023.10.08.561337. doi: 10.1101/2023.10.08.561337. bioRxiv. 2023. PMID: 37873463 Free PMC article. Preprint.

9

The role of body computed tomography in hospitalized patients with obscure infection: Retrospective consecutive cohort study.

Pohlan J, Hernando MIO, Hogrebe A, Witham D, Muench G, Kwon HJ, Goehler F, Marek A, Praeger D, Dewey M. Pohlan J, et al. Among authors: hogrebe a. Eur J Radiol. 2020 Nov;132:109325. doi: 10.1016/j.ejrad.2020.109325. Epub 2020 Oct 1. Eur J Radiol. 2020. PMID: 33027726

10

Proteome activity landscapes of tumor cell lines determine drug responses.

Frejno M, Meng C, Ruprecht B, Oellerich T, Scheich S, Kleigrewe K, Drecoll E, Samaras P, Hogrebe A, Helm D, Mergner J, Zecha J, Heinzlmeir S, Wilhelm M, Dorn J, Kvasnicka HM, Serve H, Weichert W, Kuster B. Frejno M, et al. Among authors: hogrebe a. Nat Commun. 2020 Jul 20;11(1):3639. doi: 10.1038/s41467-020-17336-9. Nat Commun. 2020. PMID: 32686665 Free PMC article.

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