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Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples.
de Vries JJC, Brown JR, Fischer N, Sidorov IA, Morfopoulou S, Huang J, Munnink BBO, Sayiner A, Bulgurcu A, Rodriguez C, Gricourt G, Keyaerts E, Beller L, Bachofen C, Kubacki J, Samuel C, Florian L, Dennis S, Beer M, Hoeper D, Huber M, Kufner V, Zaheri M, Lebrand A, Papa A, van Boheemen S, Kroes ACM, Breuer J, Lopez-Labrador FX, Claas ECJ. de Vries JJC, et al. Among authors: huang j. J Clin Virol. 2021 Aug;141:104908. doi: 10.1016/j.jcv.2021.104908. Epub 2021 Jul 8. J Clin Virol. 2021. PMID: 34273858 Free PMC article.
SARS Coronavirus-2 variant tracing within the first Coronavirus Disease 19 clusters in northern Germany.
Pfefferle S, Günther T, Kobbe R, Czech-Sioli M, Nörz D, Santer R, Oh J, Kluge S, Oestereich L, Peldschus K, Indenbirken D, Huang J, Grundhoff A, Aepfelbacher M, Knobloch JK, Lütgehetmann M, Fischer N. Pfefferle S, et al. Among authors: huang j. Clin Microbiol Infect. 2021 Jan;27(1):130.e5-130.e8. doi: 10.1016/j.cmi.2020.09.034. Epub 2020 Sep 29. Clin Microbiol Infect. 2021. PMID: 33007476 Free PMC article.
An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities.
O'Sullivan DM, Doyle RM, Temisak S, Redshaw N, Whale AS, Logan G, Huang J, Fischer N, Amos GCA, Preston MD, Marchesi JR, Wagner J, Parkhill J, Motro Y, Denise H, Finn RD, Harris KA, Kay GL, O'Grady J, Ransom-Jones E, Wu H, Laing E, Studholme DJ, Benavente ED, Phelan J, Clark TG, Moran-Gilad J, Huggett JF. O'Sullivan DM, et al. Among authors: huang j. Sci Rep. 2021 May 19;11(1):10590. doi: 10.1038/s41598-021-89881-2. Sci Rep. 2021. PMID: 34012005 Free PMC article.
Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Northern Germany.
Pfefferle S, Huang J, Nörz D, Indenbirken D, Lütgehetmann M, Oestereich L, Günther T, Grundhoff A, Aepfelbacher M, Fischer N. Pfefferle S, et al. Among authors: huang j. Microbiol Resour Announc. 2020 Jun 4;9(23):e00520-20. doi: 10.1128/MRA.00520-20. Microbiol Resour Announc. 2020. PMID: 32499358 Free PMC article.
Yersinia remodels epigenetic histone modifications in human macrophages.
Bekere I, Huang J, Schnapp M, Rudolph M, Berneking L, Ruckdeschel K, Grundhoff A, Günther T, Fischer N, Aepfelbacher M. Bekere I, et al. Among authors: huang j. PLoS Pathog. 2021 Nov 18;17(11):e1010074. doi: 10.1371/journal.ppat.1010074. eCollection 2021 Nov. PLoS Pathog. 2021. PMID: 34793580 Free PMC article.
Target capture sequencing reveals a monoclonal outbreak of respiratory syncytial virus B infections among adult hematologic patients.
Baier C, Huang J, Reumann K, Indenbirken D, Thol F, Koenecke C, Ebadi E, Heim A, Bange FC, Haid S, Pietschmann T, Fischer N. Baier C, et al. Among authors: huang j. Antimicrob Resist Infect Control. 2022 Jun 21;11(1):88. doi: 10.1186/s13756-022-01120-z. Antimicrob Resist Infect Control. 2022. PMID: 35729671 Free PMC article.
Mechanisms of CD8+ T-cell failure in chronic hepatitis E virus infection.
Kemming J, Gundlach S, Panning M, Huzly D, Huang J, Lütgehetmann M, Pischke S, Schulze Zur Wiesch J, Emmerich F, Llewellyn-Lacey S, Price DA, Tanriver Y, Warnatz K, Boettler T, Thimme R, Hofmann M, Fischer N, Neumann-Haefelin C. Kemming J, et al. Among authors: huang j. J Hepatol. 2022 Oct;77(4):978-990. doi: 10.1016/j.jhep.2022.05.019. Epub 2022 May 28. J Hepatol. 2022. PMID: 35636577 Free article.
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