Ideker T - Search Results

1

Quantitative Translation of Dog-to-Human Aging by Conserved Remodeling of the DNA Methylome.

Wang T, Ma J, Hogan AN, Fong S, Licon K, Tsui B, Kreisberg JF, Adams PD, Carvunis AR, Bannasch DL, Ostrander EA, Ideker T. Wang T, et al. Among authors: ideker t. Cell Syst. 2020 Aug 26;11(2):176-185.e6. doi: 10.1016/j.cels.2020.06.006. Epub 2020 Jul 2. Cell Syst. 2020. PMID: 32619550 Free PMC article.

2

Coevolution within a transcriptional network by compensatory trans and cis mutations.

Kuo D, Licon K, Bandyopadhyay S, Chuang R, Luo C, Catalana J, Ravasi T, Tan K, Ideker T. Kuo D, et al. Among authors: ideker t. Genome Res. 2010 Dec;20(12):1672-8. doi: 10.1101/gr.111765.110. Epub 2010 Oct 26. Genome Res. 2010. PMID: 20978140 Free PMC article.

3

Rewiring of genetic networks in response to DNA damage.

Bandyopadhyay S, Mehta M, Kuo D, Sung MK, Chuang R, Jaehnig EJ, Bodenmiller B, Licon K, Copeland W, Shales M, Fiedler D, Dutkowski J, Guénolé A, van Attikum H, Shokat KM, Kolodner RD, Huh WK, Aebersold R, Keogh MC, Krogan NJ, Ideker T. Bandyopadhyay S, et al. Among authors: ideker t. Science. 2010 Dec 3;330(6009):1385-9. doi: 10.1126/science.1195618. Science. 2010. PMID: 21127252 Free PMC article.

4

Genome-wide methylation profiles reveal quantitative views of human aging rates.

Hannum G, Guinney J, Zhao L, Zhang L, Hughes G, Sadda S, Klotzle B, Bibikova M, Fan JB, Gao Y, Deconde R, Chen M, Rajapakse I, Friend S, Ideker T, Zhang K. Hannum G, et al. Among authors: ideker t. Mol Cell. 2013 Jan 24;49(2):359-367. doi: 10.1016/j.molcel.2012.10.016. Epub 2012 Nov 21. Mol Cell. 2013. PMID: 23177740 Free PMC article.

5

Decoupling epigenetic and genetic effects through systematic analysis of gene position.

Chen M, Licon K, Otsuka R, Pillus L, Ideker T. Chen M, et al. Among authors: ideker t. Cell Rep. 2013 Jan 31;3(1):128-37. doi: 10.1016/j.celrep.2012.12.003. Epub 2013 Jan 3. Cell Rep. 2013. PMID: 23291096 Free PMC article.

6

Integrative approaches for finding modular structure in biological networks.

Mitra K, Carvunis AR, Ramesh SK, Ideker T. Mitra K, et al. Among authors: ideker t. Nat Rev Genet. 2013 Oct;14(10):719-32. doi: 10.1038/nrg3552. Nat Rev Genet. 2013. PMID: 24045689 Free PMC article. Review.

7

A UV-induced genetic network links the RSC complex to nucleotide excision repair and shows dose-dependent rewiring.

Srivas R, Costelloe T, Carvunis AR, Sarkar S, Malta E, Sun SM, Pool M, Licon K, van Welsem T, van Leeuwen F, McHugh PJ, van Attikum H, Ideker T. Srivas R, et al. Among authors: ideker t. Cell Rep. 2013 Dec 26;5(6):1714-24. doi: 10.1016/j.celrep.2013.11.035. Epub 2013 Dec 19. Cell Rep. 2013. PMID: 24360959 Free PMC article.

8

Siri of the cell: what biology could learn from the iPhone.

Carvunis AR, Ideker T. Carvunis AR, et al. Among authors: ideker t. Cell. 2014 Apr 24;157(3):534-8. doi: 10.1016/j.cell.2014.03.009. Cell. 2014. PMID: 24766803 Free PMC article.

9

Chemogenetic profiling identifies RAD17 as synthetically lethal with checkpoint kinase inhibition.

Shen JP, Srivas R, Gross A, Li J, Jaehnig EJ, Sun SM, Bojorquez-Gomez A, Licon K, Sivaganesh V, Xu JL, Klepper K, Yeerna H, Pekin D, Qiu CP, van Attikum H, Sobol RW, Ideker T. Shen JP, et al. Among authors: ideker t. Oncotarget. 2015 Nov 3;6(34):35755-69. doi: 10.18632/oncotarget.5928. Oncotarget. 2015. PMID: 26437225 Free PMC article.

10

Analysis of Matched Tumor and Normal Profiles Reveals Common Transcriptional and Epigenetic Signals Shared across Cancer Types.

Gross AM, Kreisberg JF, Ideker T. Gross AM, et al. Among authors: ideker t. PLoS One. 2015 Nov 10;10(11):e0142618. doi: 10.1371/journal.pone.0142618. eCollection 2015. PLoS One. 2015. PMID: 26555223 Free PMC article.

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