Isserlin R - Search Results

1

WordCloud: a Cytoscape plugin to create a visual semantic summary of networks.

Oesper L, Merico D, Isserlin R, Bader GD. Oesper L, et al. Among authors: isserlin r. Source Code Biol Med. 2011 Apr 7;6:7. doi: 10.1186/1751-0473-6-7. Source Code Biol Med. 2011. PMID: 21473782 Free PMC article.

2

Visualizing gene-set enrichment results using the Cytoscape plug-in enrichment map.

Merico D, Isserlin R, Bader GD. Merico D, et al. Among authors: isserlin r. Methods Mol Biol. 2011;781:257-77. doi: 10.1007/978-1-61779-276-2_12. Methods Mol Biol. 2011. PMID: 21877285

3

AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations.

Kucera M, Isserlin R, Arkhangorodsky A, Bader GD. Kucera M, et al. Among authors: isserlin r. F1000Res. 2016 Jul 15;5:1717. doi: 10.12688/f1000research.9090.1. eCollection 2016. F1000Res. 2016. PMID: 27830058 Free PMC article.

4

Enrichment Map - a Cytoscape app to visualize and explore OMICs pathway enrichment results.

Isserlin R, Merico D, Voisin V, Bader GD. Isserlin R, et al. F1000Res. 2014 Jul 1;3:141. doi: 10.12688/f1000research.4536.1. eCollection 2014. F1000Res. 2014. PMID: 25075306 Free PMC article.

5

Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap.

Reimand J, Isserlin R, Voisin V, Kucera M, Tannus-Lopes C, Rostamianfar A, Wadi L, Meyer M, Wong J, Xu C, Merico D, Bader GD. Reimand J, et al. Among authors: isserlin r. Nat Protoc. 2019 Feb;14(2):482-517. doi: 10.1038/s41596-018-0103-9. Nat Protoc. 2019. PMID: 30664679 Free PMC article.

6

Social Network: a Cytoscape app for visualizing co-authorship networks.

Kofia V, Isserlin R, Buchan AM, Bader GD. Kofia V, et al. Among authors: isserlin r. F1000Res. 2015 Aug 5;4:481. doi: 10.12688/f1000research.6804.3. eCollection 2015. F1000Res. 2015. PMID: 26949516 Free PMC article.

7

Enrichment map: a network-based method for gene-set enrichment visualization and interpretation.

Merico D, Isserlin R, Stueker O, Emili A, Bader GD. Merico D, et al. Among authors: isserlin r. PLoS One. 2010 Nov 15;5(11):e13984. doi: 10.1371/journal.pone.0013984. PLoS One. 2010. PMID: 21085593 Free PMC article.

8

Integration of biological networks and gene expression data using Cytoscape.

Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Among authors: isserlin r. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.

9

The Biomolecular Interaction Network Database in PSI-MI 2.5.

Isserlin R, El-Badrawi RA, Bader GD. Isserlin R, et al. Database (Oxford). 2011 Jan 12;2011:baq037. doi: 10.1093/database/baq037. Print 2011. Database (Oxford). 2011. PMID: 21233089 Free PMC article.

10

netDx: interpretable patient classification using integrated patient similarity networks.

Pai S, Hui S, Isserlin R, Shah MA, Kaka H, Bader GD. Pai S, et al. Among authors: isserlin r. Mol Syst Biol. 2019 Mar 14;15(3):e8497. doi: 10.15252/msb.20188497. Mol Syst Biol. 2019. PMID: 30872331 Free PMC article.

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