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Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.
Weinert LA, Chaudhuri RR, Wang J, Peters SE, Corander J, Jombart T, Baig A, Howell KJ, Vehkala M, Välimäki N, Harris D, Chieu TT, Van Vinh Chau N, Campbell J, Schultsz C, Parkhill J, Bentley SD, Langford PR, Rycroft AN, Wren BW, Farrar J, Baker S, Hoa NT, Holden MT, Tucker AW, Maskell DJ; BRaDP1T Consortium. Weinert LA, et al. Among authors: jombart t. Nat Commun. 2015 Mar 31;6:6740. doi: 10.1038/ncomms7740. Nat Commun. 2015. PMID: 25824154 Free PMC article.
High levels of antimicrobial resistance among escherichia coli isolates from livestock farms and synanthropic rats and shrews in the Mekong Delta of Vietnam.
Nhung NT, Cuong NV, Campbell J, Hoa NT, Bryant JE, Truc VN, Kiet BT, Jombart T, Trung NV, Hien VB, Thwaites G, Baker S, Carrique-Mas J. Nhung NT, et al. Among authors: jombart t. Appl Environ Microbiol. 2015 Feb;81(3):812-20. doi: 10.1128/AEM.03366-14. Epub 2014 Nov 14. Appl Environ Microbiol. 2015. PMID: 25398864 Free PMC article.
Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting.
Tong SY, Holden MT, Nickerson EK, Cooper BS, Köser CU, Cori A, Jombart T, Cauchemez S, Fraser C, Wuthiekanun V, Thaipadungpanit J, Hongsuwan M, Day NP, Limmathurotsakul D, Parkhill J, Peacock SJ. Tong SY, et al. Among authors: jombart t. Genome Res. 2015 Jan;25(1):111-8. doi: 10.1101/gr.174730.114. Epub 2014 Dec 9. Genome Res. 2015. PMID: 25491771 Free PMC article.
A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae.
Chung The H, Karkey A, Pham Thanh D, Boinett CJ, Cain AK, Ellington M, Baker KS, Dongol S, Thompson C, Harris SR, Jombart T, Le Thi Phuong T, Tran Do Hoang N, Ha Thanh T, Shretha S, Joshi S, Basnyat B, Thwaites G, Thomson NR, Rabaa MA, Baker S. Chung The H, et al. Among authors: jombart t. EMBO Mol Med. 2015 Mar;7(3):227-39. doi: 10.15252/emmm.201404767. EMBO Mol Med. 2015. PMID: 25712531 Free PMC article.
Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.
Weinert LA, Chaudhuri RR, Wang J, Peters SE, Corander J, Jombart T, Baig A, Howell KJ, Vehkala M, Välimäki N, Harris D, Chieu TT, Chau NV, Campbell J, Schultsz C, Parkhill J, Bentley SD, Langford PR, Rycroft AN, Wren BW, Farrar J, Baker S, Hoa NT, Holden MT, Tucker AW, Maskell DJ; BRaDP1T Consortium. Weinert LA, et al. Among authors: jombart t. Nat Commun. 2015 May 12;6:7272. doi: 10.1038/ncomms8272. Nat Commun. 2015. PMID: 25966020 Free PMC article. No abstract available.
The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water.
Karkey A, Jombart T, Walker AW, Thompson CN, Torres A, Dongol S, Tran Vu Thieu N, Pham Thanh D, Tran Thi Ngoc D, Voong Vinh P, Singer AC, Parkhill J, Thwaites G, Basnyat B, Ferguson N, Baker S. Karkey A, et al. Among authors: jombart t. PLoS Negl Trop Dis. 2016 Jan 6;10(1):e0004346. doi: 10.1371/journal.pntd.0004346. eCollection 2016 Jan. PLoS Negl Trop Dis. 2016. PMID: 26735696 Free PMC article.
Publisher Correction: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.
Weinert LA, Chaudhuri RR, Wang J, Peters SE, Corander J, Jombart T, Baig A, Howell KJ, Vehkala M, Välimäki N, Harris D, Chieu TTB, Van Vinh Chau N, Campbell J, Schultsz C, Parkhill J, Bentley SD, Langford PR, Rycroft AN, Wren BW, Farrar J, Baker S, Hoa NT, Holden MTG, Tucker AW, Maskell DJ; BRaDP1T Consortium. Weinert LA, et al. Among authors: jombart t. Nat Commun. 2019 Nov 22;10(1):5326. doi: 10.1038/s41467-019-13138-w. Nat Commun. 2019. PMID: 31757940 Free PMC article.
Differential antimicrobial susceptibility profiles between symptomatic and asymptomatic non-typhoidal Salmonella infections in Vietnamese children.
Parisi A, Le Thi Phuong T, Mather AE, Jombart T, Thanh Tuyen H, Phu Huong Lan N, Hoang Thu Trang N, Carrique-Mas J, Campbell JI, Glass K, Kirk MD, Baker S. Parisi A, et al. Among authors: jombart t. Epidemiol Infect. 2020 May 26;148:e144. doi: 10.1017/S0950268820001168. Epidemiol Infect. 2020. PMID: 32450932 Free PMC article.
The role of animals as a source of antimicrobial resistant nontyphoidal Salmonella causing invasive and non-invasive human disease in Vietnam.
Parisi A, Phuong TLT, Mather AE, Jombart T, Tuyen HT, Lan NPH, Trang NHT, Carrique-Mas J, Campbell JI, Trung NV, Glass K, Kirk MD, Baker S. Parisi A, et al. Among authors: jombart t. Infect Genet Evol. 2020 Nov;85:104534. doi: 10.1016/j.meegid.2020.104534. Epub 2020 Sep 11. Infect Genet Evol. 2020. PMID: 32920195 Free PMC article.
Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves.
Lindsey BB, Villabona-Arenas CJ, Campbell F, Keeley AJ, Parker MD, Shah DR, Parsons H, Zhang P, Kakkar N, Gallis M, Foulkes BH, Wolverson P, Louka SF, Christou S, State A, Johnson K, Raza M, Hsu S, Jombart T, Cori A; Sheffield COVID-19 Genomics Group; COVID-19 Genomics UK (COG-UK) consortium; CMMID COVID-19 working group; Evans CM, Partridge DG, Atkins KE, Hué S, de Silva TI. Lindsey BB, et al. Among authors: jombart t. Nat Commun. 2022 Feb 3;13(1):671. doi: 10.1038/s41467-022-28291-y. Nat Commun. 2022. PMID: 35115517 Free PMC article.
131 results