Charge-driven condensation of RNA and proteins suggests broad role of phase separation in cytoplasmic environments

Elife. 2021 Jan 26:10:e64004. doi: 10.7554/eLife.64004.

Abstract

Phase separation processes are increasingly being recognized as important organizing mechanisms of biological macromolecules in cellular environments. Well-established drivers of phase separation are multi-valency and intrinsic disorder. Here, we show that globular macromolecules may condense simply based on electrostatic complementarity. More specifically, phase separation of mixtures between RNA and positively charged proteins is described from a combination of multiscale computer simulations with microscopy and spectroscopy experiments. Phase diagrams were mapped out as a function of molecular concentrations in experiment and as a function of molecular size and temperature via simulations. The resulting condensates were found to retain at least some degree of internal dynamics varying as a function of the molecular composition. The results suggest a more general principle for phase separation that is based primarily on electrostatic complementarity without invoking polymer properties as in most previous studies. Simulation results furthermore suggest that such phase separation may occur widely in heterogenous cellular environment between nucleic acid and protein components.

Keywords: FRET spectroscopy; NMR spectroscopy; coarse-grained modeling; confocal microscopy; electrostatics; liquid-liquid phase separation; none; physics of living systems.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Cytoplasm / chemistry*
  • Molecular Dynamics Simulation
  • Proteins / chemistry*
  • RNA / chemistry*

Substances

  • Proteins
  • RNA