Karp PD - Search Results

1

Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery.

Yeh I, Hanekamp T, Tsoka S, Karp PD, Altman RB. Yeh I, et al. Among authors: karp pd. Genome Res. 2004 May;14(5):917-24. doi: 10.1101/gr.2050304. Epub 2004 Apr 12. Genome Res. 2004. PMID: 15078855 Free PMC article.

2

Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO).

Yeh I, Karp PD, Noy NF, Altman RB. Yeh I, et al. Among authors: karp pd. Bioinformatics. 2003 Jan 22;19(2):241-8. doi: 10.1093/bioinformatics/19.2.241. Bioinformatics. 2003. PMID: 12538245

3

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes.

Karp PD, Ouzounis CA, Moore-Kochlacs C, Goldovsky L, Kaipa P, Ahrén D, Tsoka S, Darzentas N, Kunin V, López-Bigas N. Karp PD, et al. Nucleic Acids Res. 2005 Oct 24;33(19):6083-9. doi: 10.1093/nar/gki892. Print 2005. Nucleic Acids Res. 2005. PMID: 16246909 Free PMC article.

4

Global properties of the metabolic map of Escherichia coli.

Ouzounis CA, Karp PD. Ouzounis CA, et al. Among authors: karp pd. Genome Res. 2000 Apr;10(4):568-76. doi: 10.1101/gr.10.4.568. Genome Res. 2000. PMID: 10779499 Free PMC article.

5

Computational prediction of human metabolic pathways from the complete human genome.

Romero P, Wagg J, Green ML, Kaiser D, Krummenacker M, Karp PD. Romero P, et al. Among authors: karp pd. Genome Biol. 2005;6(1):R2. doi: 10.1186/gb-2004-6-1-r2. Epub 2004 Dec 22. Genome Biol. 2005. PMID: 15642094 Free PMC article.

6

MetaCyc and AraCyc. Metabolic pathway databases for plant research.

Zhang P, Foerster H, Tissier CP, Mueller L, Paley S, Karp PD, Rhee SY. Zhang P, et al. Among authors: karp pd. Plant Physiol. 2005 May;138(1):27-37. doi: 10.1104/pp.105.060376. Plant Physiol. 2005. PMID: 15888675 Free PMC article.

7

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.

Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BØ. Feist AM, et al. Among authors: karp pd. Mol Syst Biol. 2007;3:121. doi: 10.1038/msb4100155. Epub 2007 Jun 26. Mol Syst Biol. 2007. PMID: 17593909 Free PMC article.

8

A survey of orphan enzyme activities.

Pouliot Y, Karp PD. Pouliot Y, et al. Among authors: karp pd. BMC Bioinformatics. 2007 Jul 10;8:244. doi: 10.1186/1471-2105-8-244. BMC Bioinformatics. 2007. PMID: 17623104 Free PMC article.

9

Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants.

Zhang P, Dreher K, Karthikeyan A, Chi A, Pujar A, Caspi R, Karp P, Kirkup V, Latendresse M, Lee C, Mueller LA, Muller R, Rhee SY. Zhang P, et al. Plant Physiol. 2010 Aug;153(4):1479-91. doi: 10.1104/pp.110.157396. Epub 2010 Jun 3. Plant Physiol. 2010. PMID: 20522724 Free PMC article.

10

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD. Caspi R, et al. Among authors: karp pd. Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71. doi: 10.1093/nar/gkt1103. Epub 2013 Nov 12. Nucleic Acids Res. 2014. PMID: 24225315 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

149 results

Search Page