Kathiria A - Search Results

1

Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks.

Freimer JW, Shaked O, Naqvi S, Sinnott-Armstrong N, Kathiria A, Garrido CM, Chen AF, Cortez JT, Greenleaf WJ, Pritchard JK, Marson A. Freimer JW, et al. Among authors: kathiria a. Nat Genet. 2022 Aug;54(8):1133-1144. doi: 10.1038/s41588-022-01106-y. Epub 2022 Jul 11. Nat Genet. 2022. PMID: 35817986 Free PMC article.

2

NEAT-seq: simultaneous profiling of intra-nuclear proteins, chromatin accessibility and gene expression in single cells.

Chen AF, Parks B, Kathiria AS, Ober-Reynolds B, Goronzy JJ, Greenleaf WJ. Chen AF, et al. Among authors: kathiria as. Nat Methods. 2022 May;19(5):547-553. doi: 10.1038/s41592-022-01461-y. Epub 2022 May 2. Nat Methods. 2022. PMID: 35501385

3

Landscape of stimulation-responsive chromatin across diverse human immune cells.

Calderon D, Nguyen MLT, Mezger A, Kathiria A, Müller F, Nguyen V, Lescano N, Wu B, Trombetta J, Ribado JV, Knowles DA, Gao Z, Blaeschke F, Parent AV, Burt TD, Anderson MS, Criswell LA, Greenleaf WJ, Marson A, Pritchard JK. Calderon D, et al. Among authors: kathiria a. Nat Genet. 2019 Oct;51(10):1494-1505. doi: 10.1038/s41588-019-0505-9. Epub 2019 Sep 30. Nat Genet. 2019. PMID: 31570894 Free PMC article.

4

The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation.

Kim DS, Risca VI, Reynolds DL, Chappell J, Rubin AJ, Jung N, Donohue LKH, Lopez-Pajares V, Kathiria A, Shi M, Zhao Z, Deep H, Sharmin M, Rao D, Lin S, Chang HY, Snyder MP, Greenleaf WJ, Kundaje A, Khavari PA. Kim DS, et al. Among authors: kathiria a. Nat Genet. 2021 Nov;53(11):1564-1576. doi: 10.1038/s41588-021-00947-3. Epub 2021 Oct 14. Nat Genet. 2021. PMID: 34650237 Free PMC article.

5

Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia.

Granja JM, Klemm S, McGinnis LM, Kathiria AS, Mezger A, Corces MR, Parks B, Gars E, Liedtke M, Zheng GXY, Chang HY, Majeti R, Greenleaf WJ. Granja JM, et al. Among authors: kathiria as. Nat Biotechnol. 2019 Dec;37(12):1458-1465. doi: 10.1038/s41587-019-0332-7. Epub 2019 Dec 2. Nat Biotechnol. 2019. PMID: 31792411 Free PMC article.

6

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues.

Corces MR, Trevino AE, Hamilton EG, Greenside PG, Sinnott-Armstrong NA, Vesuna S, Satpathy AT, Rubin AJ, Montine KS, Wu B, Kathiria A, Cho SW, Mumbach MR, Carter AC, Kasowski M, Orloff LA, Risca VI, Kundaje A, Khavari PA, Montine TJ, Greenleaf WJ, Chang HY. Corces MR, et al. Among authors: kathiria a. Nat Methods. 2017 Oct;14(10):959-962. doi: 10.1038/nmeth.4396. Epub 2017 Aug 28. Nat Methods. 2017. PMID: 28846090 Free PMC article.

7

Single-cell transcriptomic analysis of the adult mouse spinal cord reveals molecular diversity of autonomic and skeletal motor neurons.

Blum JA, Klemm S, Shadrach JL, Guttenplan KA, Nakayama L, Kathiria A, Hoang PT, Gautier O, Kaltschmidt JA, Greenleaf WJ, Gitler AD. Blum JA, et al. Among authors: kathiria a. Nat Neurosci. 2021 Apr;24(4):572-583. doi: 10.1038/s41593-020-00795-0. Epub 2021 Feb 15. Nat Neurosci. 2021. PMID: 33589834 Free PMC article.

8

Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution.

Trevino AE, Müller F, Andersen J, Sundaram L, Kathiria A, Shcherbina A, Farh K, Chang HY, Pașca AM, Kundaje A, Pașca SP, Greenleaf WJ. Trevino AE, et al. Among authors: kathiria a. Cell. 2021 Sep 16;184(19):5053-5069.e23. doi: 10.1016/j.cell.2021.07.039. Epub 2021 Aug 13. Cell. 2021. PMID: 34390642 Free article.

9

Integrated single-cell transcriptomics and epigenomics reveals strong germinal center-associated etiology of autoimmune risk loci.

King HW, Wells KL, Shipony Z, Kathiria AS, Wagar LE, Lareau C, Orban N, Capasso R, Davis MM, Steinmetz LM, James LK, Greenleaf WJ. King HW, et al. Among authors: kathiria as. Sci Immunol. 2021 Oct 15;6(64):eabh3768. doi: 10.1126/sciimmunol.abh3768. Epub 2021 Oct 8. Sci Immunol. 2021. PMID: 34623901 Free PMC article.

10

Single-cell epigenomic variability reveals functional cancer heterogeneity.

Litzenburger UM, Buenrostro JD, Wu B, Shen Y, Sheffield NC, Kathiria A, Greenleaf WJ, Chang HY. Litzenburger UM, et al. Among authors: kathiria a. Genome Biol. 2017 Jan 24;18(1):15. doi: 10.1186/s13059-016-1133-7. Genome Biol. 2017. PMID: 28118844 Free PMC article.

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