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Enabling precision medicine via standard communication of HTS provenance, analysis, and results.
Alterovitz G, Dean D, Goble C, Crusoe MR, Soiland-Reyes S, Bell A, Hayes A, Suresh A, Purkayastha A, King CH, Taylor D, Johanson E, Thompson EE, Donaldson E, Morizono H, Tsang H, Vora JK, Goecks J, Yao J, Almeida JS, Keeney J, Addepalli K, Krampis K, Smith KM, Guo L, Walderhaug M, Schito M, Ezewudo M, Guimera N, Walsh P, Kahsay R, Gottipati S, Rodwell TC, Bloom T, Lai Y, Simonyan V, Mazumder R. Alterovitz G, et al. Among authors: keeney j. PLoS Biol. 2018 Dec 31;16(12):e3000099. doi: 10.1371/journal.pbio.3000099. eCollection 2018 Dec. PLoS Biol. 2018. PMID: 30596645 Free PMC article.
Bioinformatics tools developed to support BioCompute Objects.
Patel JA, Dean DA, King CH, Xiao N, Koc S, Minina E, Golikov A, Brooks P, Kahsay R, Navelkar R, Ray M, Roberson D, Armstrong C, Mazumder R, Keeney J. Patel JA, et al. Among authors: keeney j. Database (Oxford). 2021 Mar 30;2021:baab008. doi: 10.1093/database/baab008. Database (Oxford). 2021. PMID: 33784373 Free PMC article.
Communicating regulatory high-throughput sequencing data using BioCompute Objects.
King CHS 4th, Keeney J, Guimera N, Das S, Weber M, Fochtman B, Walderhaug MO, Talwar S, Patel JA, Mazumder R, Donaldson EF. King CHS 4th, et al. Among authors: keeney j. Drug Discov Today. 2022 Apr;27(4):1108-1114. doi: 10.1016/j.drudis.2022.01.007. Epub 2022 Jan 22. Drug Discov Today. 2022. PMID: 35077912 Review.
OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of Related Cancer and Healthy Data.
Dingerdissen HM, Bastian F, Vijay-Shanker K, Robinson-Rechavi M, Bell A, Gogate N, Gupta S, Holmes E, Kahsay R, Keeney J, Kincaid H, King CH, Liu D, Crichton DJ, Mazumder R. Dingerdissen HM, et al. Among authors: keeney j. JCO Clin Cancer Inform. 2020 Mar;4:210-220. doi: 10.1200/CCI.19.00117. JCO Clin Cancer Inform. 2020. PMID: 32142370 Free PMC article.
Recent Advances in Systems and Network Medicine: Meeting Report from the First International Conference in Systems and Network Medicine.
Kurnat-Thoma E, Baranova A, Baird P, Brodsky E, Butte AJ, Cheema AK, Cheng F, Dutta S, Grant C, Giordano J, Maitland-van der Zee AH, Fridsma DB, Jarrin R, Kann MG, Keeney J, Loscalzo J, Madhavan G, Maron BA, McBride DK, McKean M, Mun SK, Palmer JC, Patel B, Parakh K, Pariser AR, Pristipino C, Radstake TRDJ, Rajasimha HK, Rouse WB, Rozman D, Saleh A, Schmidt HHHW, Schultz N, Sethi T, Silverman EK, Skopac J, Svab I, Trujillo S, Valentine JE, Verma D, West BJ, Vasudevan S. Kurnat-Thoma E, et al. Among authors: keeney j. Syst Med (New Rochelle). 2020 Feb 26;3(1):22-35. doi: 10.1089/sysm.2020.0001. eCollection 2020. Syst Med (New Rochelle). 2020. PMID: 32226924 Free PMC article.
DUF1220-domain copy number implicated in human brain-size pathology and evolution.
Dumas LJ, O'Bleness MS, Davis JM, Dickens CM, Anderson N, Keeney JG, Jackson J, Sikela M, Raznahan A, Giedd J, Rapoport J, Nagamani SS, Erez A, Brunetti-Pierri N, Sugalski R, Lupski JR, Fingerlin T, Cheung SW, Sikela JM. Dumas LJ, et al. Among authors: keeney jg. Am J Hum Genet. 2012 Sep 7;91(3):444-54. doi: 10.1016/j.ajhg.2012.07.016. Epub 2012 Aug 16. Am J Hum Genet. 2012. PMID: 22901949 Free PMC article.
131 results