Koga N - Search Results

1

RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite.

Fleishman SJ, Leaver-Fay A, Corn JE, Strauch EM, Khare SD, Koga N, Ashworth J, Murphy P, Richter F, Lemmon G, Meiler J, Baker D. Fleishman SJ, et al. Among authors: koga n. PLoS One. 2011;6(6):e20161. doi: 10.1371/journal.pone.0020161. Epub 2011 Jun 24. PLoS One. 2011. PMID: 21731610 Free PMC article.

2

Restricted sidechain plasticity in the structures of native proteins and complexes.

Fleishman SJ, Khare SD, Koga N, Baker D. Fleishman SJ, et al. Among authors: koga n. Protein Sci. 2011 Apr;20(4):753-7. doi: 10.1002/pro.604. Protein Sci. 2011. PMID: 21432939 Free PMC article.

3

Principles for designing ideal protein structures.

Koga N, Tatsumi-Koga R, Liu G, Xiao R, Acton TB, Montelione GT, Baker D. Koga N, et al. Nature. 2012 Nov 8;491(7423):222-7. doi: 10.1038/nature11600. Nature. 2012. PMID: 23135467 Free PMC article.

4

Cyclic oligomer design with de novo αβ-proteins.

Lin YR, Koga N, Vorobiev SM, Baker D. Lin YR, et al. Among authors: koga n. Protein Sci. 2017 Nov;26(11):2187-2194. doi: 10.1002/pro.3270. Protein Sci. 2017. PMID: 28801928 Free PMC article.

5

Role of backbone strain in de novo design of complex α/β protein structures.

Koga N, Koga R, Liu G, Castellanos J, Montelione GT, Baker D. Koga N, et al. Among authors: koga r. Nat Commun. 2021 Jun 24;12(1):3921. doi: 10.1038/s41467-021-24050-7. Nat Commun. 2021. PMID: 34168113 Free PMC article.

6

Control over overall shape and size in de novo designed proteins.

Lin YR, Koga N, Tatsumi-Koga R, Liu G, Clouser AF, Montelione GT, Baker D. Lin YR, et al. Among authors: koga n. Proc Natl Acad Sci U S A. 2015 Oct 6;112(40):E5478-85. doi: 10.1073/pnas.1509508112. Epub 2015 Sep 22. Proc Natl Acad Sci U S A. 2015. PMID: 26396255 Free PMC article.

7

Networks of electrostatic and hydrophobic interactions modulate the complex folding free energy surface of a designed βα protein.

Basak S, Nobrega RP, Tavella D, Deveau LM, Koga N, Tatsumi-Koga R, Baker D, Massi F, Matthews CR. Basak S, et al. Among authors: koga n. Proc Natl Acad Sci U S A. 2019 Apr 2;116(14):6806-6811. doi: 10.1073/pnas.1818744116. Epub 2019 Mar 15. Proc Natl Acad Sci U S A. 2019. PMID: 30877249 Free PMC article.

8

Forced protein unfolding leads to highly elastic and tough protein hydrogels.

Fang J, Mehlich A, Koga N, Huang J, Koga R, Gao X, Hu C, Jin C, Rief M, Kast J, Baker D, Li H. Fang J, et al. Among authors: koga r, koga n. Nat Commun. 2013;4:2974. doi: 10.1038/ncomms3974. Nat Commun. 2013. PMID: 24352111 Free PMC article.

9

Direction of actin flow dictates integrin LFA-1 orientation during leukocyte migration.

Nordenfelt P, Moore TI, Mehta SB, Kalappurakkal JM, Swaminathan V, Koga N, Lambert TJ, Baker D, Waters JC, Oldenbourg R, Tani T, Mayor S, Waterman CM, Springer TA. Nordenfelt P, et al. Among authors: koga n. Nat Commun. 2017 Dec 11;8(1):2047. doi: 10.1038/s41467-017-01848-y. Nat Commun. 2017. PMID: 29229906 Free PMC article.

10

Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions.

Swaminathan V, Kalappurakkal JM, Mehta SB, Nordenfelt P, Moore TI, Koga N, Baker DA, Oldenbourg R, Tani T, Mayor S, Springer TA, Waterman CM. Swaminathan V, et al. Among authors: koga n. Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):10648-10653. doi: 10.1073/pnas.1701136114. Proc Natl Acad Sci U S A. 2017. PMID: 29073038 Free PMC article.

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