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Software tools for single-cell tracking and quantification of cellular and molecular properties.
Hilsenbeck O, Schwarzfischer M, Skylaki S, Schauberger B, Hoppe PS, Loeffler D, Kokkaliaris KD, Hastreiter S, Skylaki E, Filipczyk A, Strasser M, Buggenthin F, Feigelman JS, Krumsiek J, van den Berg AJ, Endele M, Etzrodt M, Marr C, Theis FJ, Schroeder T. Hilsenbeck O, et al. Among authors: kokkaliaris kd. Nat Biotechnol. 2016 Jul 12;34(7):703-6. doi: 10.1038/nbt.3626. Nat Biotechnol. 2016. PMID: 27404877 No abstract available.
Prospective identification of hematopoietic lineage choice by deep learning.
Buggenthin F, Buettner F, Hoppe PS, Endele M, Kroiss M, Strasser M, Schwarzfischer M, Loeffler D, Kokkaliaris KD, Hilsenbeck O, Schroeder T, Theis FJ, Marr C. Buggenthin F, et al. Among authors: kokkaliaris kd. Nat Methods. 2017 Apr;14(4):403-406. doi: 10.1038/nmeth.4182. Epub 2017 Feb 20. Nat Methods. 2017. PMID: 28218899 Free PMC article.
Network plasticity of pluripotency transcription factors in embryonic stem cells.
Filipczyk A, Marr C, Hastreiter S, Feigelman J, Schwarzfischer M, Hoppe PS, Loeffler D, Kokkaliaris KD, Endele M, Schauberger B, Hilsenbeck O, Skylaki S, Hasenauer J, Anastassiadis K, Theis FJ, Schroeder T. Filipczyk A, et al. Among authors: kokkaliaris kd. Nat Cell Biol. 2015 Oct;17(10):1235-46. doi: 10.1038/ncb3237. Epub 2015 Sep 21. Nat Cell Biol. 2015. PMID: 26389663
Multicolor quantitative confocal imaging cytometry.
Coutu DL, Kokkaliaris KD, Kunz L, Schroeder T. Coutu DL, et al. Among authors: kokkaliaris kd. Nat Methods. 2018 Jan;15(1):39-46. doi: 10.1038/nmeth.4503. Epub 2017 Nov 13. Nat Methods. 2018. PMID: 29320487
Early myeloid lineage choice is not initiated by random PU.1 to GATA1 protein ratios.
Hoppe PS, Schwarzfischer M, Loeffler D, Kokkaliaris KD, Hilsenbeck O, Moritz N, Endele M, Filipczyk A, Gambardella A, Ahmed N, Etzrodt M, Coutu DL, Rieger MA, Marr C, Strasser MK, Schauberger B, Burtscher I, Ermakova O, Bürger A, Lickert H, Nerlov C, Theis FJ, Schroeder T. Hoppe PS, et al. Among authors: kokkaliaris kd. Nature. 2016 Jul 14;535(7611):299-302. doi: 10.1038/nature18320. Nature. 2016. PMID: 27411635
40 results