Konecki DM - Search Results

1

Multimodal network diffusion predicts future disease-gene-chemical associations.

Lin CH, Konecki DM, Liu M, Wilson SJ, Nassar H, Wilkins AD, Gleich DF, Lichtarge O. Lin CH, et al. Among authors: konecki dm. Bioinformatics. 2019 May 1;35(9):1536-1543. doi: 10.1093/bioinformatics/bty858. Bioinformatics. 2019. PMID: 30304494 Free PMC article.

2

UET: a database of evolutionarily-predicted functional determinants of protein sequences that cluster as functional sites in protein structures.

Lua RC, Wilson SJ, Konecki DM, Wilkins AD, Venner E, Morgan DH, Lichtarge O. Lua RC, et al. Among authors: konecki dm. Nucleic Acids Res. 2016 Jan 4;44(D1):D308-12. doi: 10.1093/nar/gkv1279. Epub 2015 Nov 20. Nucleic Acids Res. 2016. PMID: 26590254 Free PMC article.

3

Identification of evolutionarily stable functional and immunogenic sites across the SARS-CoV-2 proteome and the greater coronavirus family.

Wang C, Konecki DM, Marciano DC, Govindarajan H, Williams AM, Wastuwidyaningtyas B, Bourquard T, Katsonis P, Lichtarge O. Wang C, et al. Among authors: konecki dm. Res Sq [Preprint]. 2021 Feb 15:rs.3.rs-95030. doi: 10.21203/rs.3.rs-95030/v1. Res Sq. 2021. PMID: 33106800 Free PMC article. Updated. Preprint.

4

Harnessing the paradoxical phenotypes of APOE ɛ2 and APOE ɛ4 to identify genetic modifiers in Alzheimer's disease.

Kim YW, Al-Ramahi I, Koire A, Wilson SJ, Konecki DM, Mota S, Soleimani S, Botas J, Lichtarge O. Kim YW, et al. Among authors: konecki dm. Alzheimers Dement. 2021 May;17(5):831-846. doi: 10.1002/alz.12240. Epub 2020 Dec 7. Alzheimers Dement. 2021. PMID: 33576571 Free PMC article.

5

Identification of evolutionarily stable functional and immunogenic sites across the SARS-CoV-2 proteome and greater coronavirus family.

Wang C, Konecki DM, Marciano DC, Govindarajan H, Williams AM, Wastuwidyaningtyas B, Bourquard T, Katsonis P, Lichtarge O. Wang C, et al. Among authors: konecki dm. Bioinformatics. 2021 Nov 18;37(22):4033-4040. doi: 10.1093/bioinformatics/btab406. Bioinformatics. 2021. PMID: 34043002 Free PMC article.

6

A general calculus of fitness landscapes finds genes under selection in cancers.

Hsu TK, Asmussen J, Koire A, Choi BK, Gadhikar MA, Huh E, Lin CH, Konecki DM, Kim YW, Pickering CR, Kimmel M, Donehower LA, Frederick MJ, Myers JN, Katsonis P, Lichtarge O. Hsu TK, et al. Among authors: konecki dm. Genome Res. 2022 May;32(5):916-929. doi: 10.1101/gr.275811.121. Epub 2022 Mar 17. Genome Res. 2022. PMID: 35301263 Free PMC article.

7

CovET: A covariation-evolutionary trace method that identifies protein structure-function modules.

Konecki DM, Hamrick S, Wang C, Agosto MA, Wensel TG, Lichtarge O. Konecki DM, et al. J Biol Chem. 2023 Jul;299(7):104896. doi: 10.1016/j.jbc.2023.104896. Epub 2023 Jun 7. J Biol Chem. 2023. PMID: 37290531 Free PMC article.

8

Rapamycin generates anti-apoptotic human Th1/Tc1 cells via autophagy for induction of xenogeneic GVHD.

Amarnath S, Flomerfelt FA, Costanzo CM, Foley JE, Mariotti J, Konecki DM, Gangopadhyay A, Eckhaus M, Wong S, Levine BL, June CH, Fowler DH. Amarnath S, et al. Among authors: konecki dm. Autophagy. 2010 May;6(4):523-41. doi: 10.4161/auto.6.4.11811. Epub 2010 May 16. Autophagy. 2010. PMID: 20404486 Free PMC article.

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