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Genome-informed Bradyrhizobium taxonomy: where to from here?
Avontuur JR, Palmer M, Beukes CW, Chan WY, Coetzee MPA, Blom J, Stępkowski T, Kyrpides NC, Woyke T, Shapiro N, Whitman WB, Venter SN, Steenkamp ET. Avontuur JR, et al. Among authors: kyrpides nc. Syst Appl Microbiol. 2019 Jul;42(4):427-439. doi: 10.1016/j.syapm.2019.03.006. Epub 2019 Apr 4. Syst Appl Microbiol. 2019. PMID: 31031014
Genome of Methanocaldococcus (Methanococcus) jannaschii.
Graham DE, Kyrpides N, Anderson IJ, Overbeek R, Whitman WB. Graham DE, et al. Methods Enzymol. 2001;330:40-123. doi: 10.1016/s0076-6879(01)30370-1. Methods Enzymol. 2001. PMID: 11210518 Review. No abstract available.
Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction.
Anderson I, Rodriguez J, Susanti D, Porat I, Reich C, Ulrich LE, Elkins JG, Mavromatis K, Lykidis A, Kim E, Thompson LS, Nolan M, Land M, Copeland A, Lapidus A, Lucas S, Detter C, Zhulin IB, Olsen GJ, Whitman W, Mukhopadhyay B, Bristow J, Kyrpides N. Anderson I, et al. J Bacteriol. 2008 Apr;190(8):2957-65. doi: 10.1128/JB.01949-07. Epub 2008 Feb 8. J Bacteriol. 2008. PMID: 18263724 Free PMC article.
The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota.
Anderson IJ, Dharmarajan L, Rodriguez J, Hooper S, Porat I, Ulrich LE, Elkins JG, Mavromatis K, Sun H, Land M, Lapidus A, Lucas S, Barry K, Huber H, Zhulin IB, Whitman WB, Mukhopadhyay B, Woese C, Bristow J, Kyrpides N. Anderson IJ, et al. BMC Genomics. 2009 Apr 2;10:145. doi: 10.1186/1471-2164-10-145. BMC Genomics. 2009. PMID: 19341479 Free PMC article.
Genomic characterization of methanomicrobiales reveals three classes of methanogens.
Anderson I, Ulrich LE, Lupa B, Susanti D, Porat I, Hooper SD, Lykidis A, Sieprawska-Lupa M, Dharmarajan L, Goltsman E, Lapidus A, Saunders E, Han C, Land M, Lucas S, Mukhopadhyay B, Whitman WB, Woese C, Bristow J, Kyrpides N. Anderson I, et al. PLoS One. 2009 Jun 4;4(6):e5797. doi: 10.1371/journal.pone.0005797. PLoS One. 2009. PMID: 19495416 Free PMC article.
Focus: Synergistetes.
Hugenholtz P, Hooper SD, Kyrpides NC. Hugenholtz P, et al. Among authors: kyrpides nc. Environ Microbiol. 2009 Jun;11(6):1327-9. doi: 10.1111/j.1462-2920.2009.01949.x. Environ Microbiol. 2009. PMID: 19635113 No abstract available.
Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09.
Boden R, Cunliffe M, Scanlan J, Moussard H, Kits KD, Klotz MG, Jetten MS, Vuilleumier S, Han J, Peters L, Mikhailova N, Teshima H, Tapia R, Kyrpides N, Ivanova N, Pagani I, Cheng JF, Goodwin L, Han C, Hauser L, Land ML, Lapidus A, Lucas S, Pitluck S, Woyke T, Stein L, Murrell JC. Boden R, et al. J Bacteriol. 2011 Dec;193(24):7001-2. doi: 10.1128/JB.06267-11. J Bacteriol. 2011. PMID: 22123758 Free PMC article.
A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T.
Siddaramappa S, Challacombe JF, Decastro RE, Pfeiffer F, Sastre DE, Giménez MI, Paggi RA, Detter JC, Davenport KW, Goodwin LA, Kyrpides N, Tapia R, Pitluck S, Lucas S, Woyke T, Maupin-Furlow JA. Siddaramappa S, et al. BMC Genomics. 2012 May 4;13:165. doi: 10.1186/1471-2164-13-165. BMC Genomics. 2012. PMID: 22559199 Free PMC article.
Complete genome sequences of six strains of the genus Methylobacterium.
Marx CJ, Bringel F, Chistoserdova L, Moulin L, Farhan Ul Haque M, Fleischman DE, Gruffaz C, Jourand P, Knief C, Lee MC, Muller EE, Nadalig T, Peyraud R, Roselli S, Russ L, Goodwin LA, Ivanova N, Kyrpides N, Lajus A, Land ML, Médigue C, Mikhailova N, Nolan M, Woyke T, Stolyar S, Vorholt JA, Vuilleumier S. Marx CJ, et al. J Bacteriol. 2012 Sep;194(17):4746-8. doi: 10.1128/JB.01009-12. J Bacteriol. 2012. PMID: 22887658 Free PMC article.
690 results