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Conducting a microbiome study.
Goodrich JK, Di Rienzi SC, Poole AC, Koren O, Walters WA, Caporaso JG, Knight R, Ley RE. Goodrich JK, et al. Among authors: ley re. Cell. 2014 Jul 17;158(2):250-262. doi: 10.1016/j.cell.2014.06.037. Cell. 2014. PMID: 25036628 Free PMC article.
The human microbiome project.
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. Turnbaugh PJ, et al. Among authors: ley re. Nature. 2007 Oct 18;449(7164):804-10. doi: 10.1038/nature06244. Nature. 2007. PMID: 17943116 Free PMC article.
Host-bacterial coevolution and the search for new drug targets.
Zaneveld J, Turnbaugh PJ, Lozupone C, Ley RE, Hamady M, Gordon JI, Knight R. Zaneveld J, et al. Among authors: ley re. Curr Opin Chem Biol. 2008 Feb;12(1):109-14. doi: 10.1016/j.cbpa.2008.01.015. Epub 2008 Mar 5. Curr Opin Chem Biol. 2008. PMID: 18280814 Free PMC article. Review.
A core gut microbiome in obese and lean twins.
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI. Turnbaugh PJ, et al. Among authors: ley re. Nature. 2009 Jan 22;457(7228):480-4. doi: 10.1038/nature07540. Epub 2008 Nov 30. Nature. 2009. PMID: 19043404 Free PMC article.
QIIME allows analysis of high-throughput community sequencing data.
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. Caporaso JG, et al. Among authors: ley re. Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. Nat Methods. 2010. PMID: 20383131 Free PMC article. No abstract available.
Direct sequencing of the human microbiome readily reveals community differences.
Kuczynski J, Costello EK, Nemergut DR, Zaneveld J, Lauber CL, Knights D, Koren O, Fierer N, Kelley ST, Ley RE, Gordon JI, Knight R. Kuczynski J, et al. Among authors: ley re. Genome Biol. 2010;11(5):210. doi: 10.1186/gb-2010-11-5-210. Epub 2010 May 5. Genome Biol. 2010. PMID: 20441597 Free PMC article. Review.
Succession of microbial consortia in the developing infant gut microbiome.
Koenig JE, Spor A, Scalfone N, Fricker AD, Stombaugh J, Knight R, Angenent LT, Ley RE. Koenig JE, et al. Among authors: ley re. Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1(Suppl 1):4578-85. doi: 10.1073/pnas.1000081107. Epub 2010 Jul 28. Proc Natl Acad Sci U S A. 2011. PMID: 20668239 Free PMC article.
Supervised classification of microbiota mitigates mislabeling errors.
Knights D, Kuczynski J, Koren O, Ley RE, Field D, Knight R, DeSantis TZ, Kelley ST. Knights D, et al. Among authors: ley re. ISME J. 2011 Apr;5(4):570-3. doi: 10.1038/ismej.2010.148. Epub 2010 Oct 7. ISME J. 2011. PMID: 20927137 Free PMC article. No abstract available.
146 results