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A machine learning approach for somatic mutation discovery.
Sci Transl Med. 2018 Sep 5;10(457):eaar7939. doi: 10.1126/scitranslmed.aar7939.
Sci Transl Med. 2018.
PMID: 30185652
Free PMC article.
Collaborating to Compete: Blood Profiling Atlas in Cancer (BloodPAC) Consortium.
Grossman RL, Abel B, Angiuoli S, Barrett JC, Bassett D, Bramlett K, Blumenthal GM, Carlsson A, Cortese R, DiGiovanna J, Davis-Dusenbery B, Dittamore R, Eberhard DA, Febbo P, Fitzsimons M, Flamig Z, Godsey J, Goswami J, Gruen A, Ortuño F, Han J, Hayes D, Hicks J, Holloway D, Hovelson D, Johnson J, Juhl H, Kalamegham R, Kamal R, Kang Q, Kelloff GJ, Klozenbuecher M, Kolatkar A, Kuhn P, Langone K, Leary R, Loverso P, Manmathan H, Martin AM, Martini J, Miller D, Mitchell M, Morgan T, Mulpuri R, Nguyen T, Otto G, Pathak A, Peters E, Philip R, Posadas E, Reese D, Reese MG, Robinson D, Dei Rossi A, Sakul H, Schageman J, Singh S, Scher HI, Schmitt K, Silvestro A, Simmons J, Simmons T, Sislow J, Talasaz A, Tang P, Tewari M, Tomlins S, Toukhy H, Tseng HR, Tuck M, Tzou A, Vinson J, Wang Y, Wells W, Welsh A, Wilbanks J, Wolf J, Young L, Lee J, Leiman LC.
Grossman RL, et al. Among authors: loverso p.
Clin Pharmacol Ther. 2017 May;101(5):589-592. doi: 10.1002/cpt.666. Epub 2017 Apr 12.
Clin Pharmacol Ther. 2017.
PMID: 28187516
Free PMC article.
Review.
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Cell type-specific transcriptome profiling in mammalian brains.
LoVerso PR, Cui F.
LoVerso PR, et al.
Front Biosci (Landmark Ed). 2016 Jun 1;21(5):973-85. doi: 10.2741/4434.
Front Biosci (Landmark Ed). 2016.
PMID: 27100485
Free PMC article.
Review.
Item in Clipboard
Cross-species Transcriptomic Comparison of In Vitro and In Vivo Mammalian Neural Cells.
LoVerso PR, Wachter CM, Cui F.
LoVerso PR, et al.
Bioinform Biol Insights. 2015 Nov 25;9:153-64. doi: 10.4137/BBI.S33124. eCollection 2015.
Bioinform Biol Insights. 2015.
PMID: 26640375
Free PMC article.
Item in Clipboard
A Computational Pipeline for Cross-Species Analysis of RNA-seq Data Using R and Bioconductor.
LoVerso PR, Cui F.
LoVerso PR, et al.
Bioinform Biol Insights. 2015 Dec 2;9:165-74. doi: 10.4137/BBI.S30884. eCollection 2015.
Bioinform Biol Insights. 2015.
PMID: 26692761
Free PMC article.
Item in Clipboard
p53 binding sites in normal and cancer cells are characterized by distinct chromatin context.
Bao F, LoVerso PR, Fisk JN, Zhurkin VB, Cui F.
Bao F, et al. Among authors: loverso pr.
Cell Cycle. 2017;16(21):2073-2085. doi: 10.1080/15384101.2017.1361064. Epub 2017 Sep 28.
Cell Cycle. 2017.
PMID: 28820292
Free PMC article.
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Prediction of nucleosome rotational positioning in yeast and human genomes based on sequence-dependent DNA anisotropy.
Cui F, Chen L, LoVerso PR, Zhurkin VB.
Cui F, et al. Among authors: loverso pr.
BMC Bioinformatics. 2014 Sep 22;15(1):313. doi: 10.1186/1471-2105-15-313.
BMC Bioinformatics. 2014.
PMID: 25244936
Free PMC article.
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