Lou S - Search Results

1

DiNeR: a Differential graphical model for analysis of co-regulation Network Rewiring.

Zhang J, Liu J, Lee D, Lou S, Chen Z, Gürsoy G, Gerstein M. Zhang J, et al. Among authors: lou s. BMC Bioinformatics. 2020 Jul 2;21(1):281. doi: 10.1186/s12859-020-03605-3. BMC Bioinformatics. 2020. PMID: 32615918 Free PMC article.

2

FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer.

Fu Y, Liu Z, Lou S, Bedford J, Mu XJ, Yip KY, Khurana E, Gerstein M. Fu Y, et al. Among authors: lou s. Genome Biol. 2014;15(10):480. doi: 10.1186/s13059-014-0480-5. Genome Biol. 2014. PMID: 25273974 Free PMC article.

3

The real cost of sequencing: scaling computation to keep pace with data generation.

Muir P, Li S, Lou S, Wang D, Spakowicz DJ, Salichos L, Zhang J, Weinstock GM, Isaacs F, Rozowsky J, Gerstein M. Muir P, et al. Among authors: lou s. Genome Biol. 2016 Mar 23;17:53. doi: 10.1186/s13059-016-0917-0. Genome Biol. 2016. PMID: 27009100 Free PMC article.

4

Erratum to: The real cost of sequencing: scaling computation to keep pace with data generation.

Muir P, Li S, Lou S, Wang D, Spakowicz DJ, Salichos L, Zhang J, Weinstock GM, Isaacs F, Rozowsky J, Gerstein M. Muir P, et al. Among authors: lou s. Genome Biol. 2016 Apr 28;17:78. doi: 10.1186/s13059-016-0961-9. Genome Biol. 2016. PMID: 27125642 Free PMC article. No abstract available.

5

MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions.

Yan KK, Lou S, Gerstein M. Yan KK, et al. Among authors: lou s. PLoS Comput Biol. 2017 Jul 24;13(7):e1005647. doi: 10.1371/journal.pcbi.1005647. eCollection 2017 Jul. PLoS Comput Biol. 2017. PMID: 28742097 Free PMC article.

6

Comprehensive functional genomic resource and integrative model for the human brain.

Wang D, Liu S, Warrell J, Won H, Shi X, Navarro FCP, Clarke D, Gu M, Emani P, Yang YT, Xu M, Gandal MJ, Lou S, Zhang J, Park JJ, Yan C, Rhie SK, Manakongtreecheep K, Zhou H, Nathan A, Peters M, Mattei E, Fitzgerald D, Brunetti T, Moore J, Jiang Y, Girdhar K, Hoffman GE, Kalayci S, Gümüş ZH, Crawford GE; PsychENCODE Consortium; Roussos P, Akbarian S, Jaffe AE, White KP, Weng Z, Sestan N, Geschwind DH, Knowles JA, Gerstein MB. Wang D, et al. Among authors: lou s. Science. 2018 Dec 14;362(6420):eaat8464. doi: 10.1126/science.aat8464. Science. 2018. PMID: 30545857 Free PMC article.

7

Building a Hybrid Physical-Statistical Classifier for Predicting the Effect of Variants Related to Protein-Drug Interactions.

Wang B, Yan C, Lou S, Emani P, Li B, Xu M, Kong X, Meyerson W, Yang YT, Lee D, Gerstein M. Wang B, et al. Among authors: lou s. Structure. 2019 Sep 3;27(9):1469-1481.e3. doi: 10.1016/j.str.2019.06.001. Epub 2019 Jul 3. Structure. 2019. PMID: 31279629 Free article.

8

GRAM: A GeneRAlized Model to predict the molecular effect of a non-coding variant in a cell-type specific manner.

Lou S, Cotter KA, Li T, Liang J, Mohsen H, Liu J, Zhang J, Cohen S, Xu J, Yu H, Rubin MA, Gerstein M. Lou S, et al. PLoS Genet. 2019 Aug 30;15(8):e1007860. doi: 10.1371/journal.pgen.1007860. eCollection 2019 Aug. PLoS Genet. 2019. PMID: 31469829 Free PMC article.

9

Genomic footprints of activated telomere maintenance mechanisms in cancer.

Sieverling L, Hong C, Koser SD, Ginsbach P, Kleinheinz K, Hutter B, Braun DM, Cortés-Ciriano I, Xi R, Kabbe R, Park PJ, Eils R, Schlesner M; PCAWG-Structural Variation Working Group; Brors B, Rippe K, Jones DTW, Feuerbach L; PCAWG Consortium. Sieverling L, et al. Nat Commun. 2020 Feb 5;11(1):733. doi: 10.1038/s41467-019-13824-9. Nat Commun. 2020. PMID: 32024817 Free PMC article.

10

Combined burden and functional impact tests for cancer driver discovery using DriverPower.

Shuai S; PCAWG Drivers and Functional Interpretation Working Group; Gallinger S, Stein LD; PCAWG Consortium. Shuai S, et al. Nat Commun. 2020 Feb 5;11(1):734. doi: 10.1038/s41467-019-13929-1. Nat Commun. 2020. PMID: 32024818 Free PMC article.

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