MacIsaac KD - Search Results

1

A quantitative model of transcriptional regulation reveals the influence of binding location on expression.

MacIsaac KD, Lo KA, Gordon W, Motola S, Mazor T, Fraenkel E. MacIsaac KD, et al. PLoS Comput Biol. 2010 Apr 29;6(4):e1000773. doi: 10.1371/journal.pcbi.1000773. PLoS Comput Biol. 2010. PMID: 20442865 Free PMC article.

2

Practical strategies for discovering regulatory DNA sequence motifs.

MacIsaac KD, Fraenkel E. MacIsaac KD, et al. PLoS Comput Biol. 2006 Apr;2(4):e36. doi: 10.1371/journal.pcbi.0020036. PLoS Comput Biol. 2006. PMID: 16683017 Free PMC article. No abstract available.

3

Transcriptional regulatory code of a eukaryotic genome.

Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW, Hannett NM, Tagne JB, Reynolds DB, Yoo J, Jennings EG, Zeitlinger J, Pokholok DK, Kellis M, Rolfe PA, Takusagawa KT, Lander ES, Gifford DK, Fraenkel E, Young RA. Harbison CT, et al. Among authors: macisaac kd. Nature. 2004 Sep 2;431(7004):99-104. doi: 10.1038/nature02800. Nature. 2004. PMID: 15343339 Free PMC article.

4

High-resolution computational models of genome binding events.

Qi Y, Rolfe A, MacIsaac KD, Gerber GK, Pokholok D, Zeitlinger J, Danford T, Dowell RD, Fraenkel E, Jaakkola TS, Young RA, Gifford DK. Qi Y, et al. Among authors: macisaac kd. Nat Biotechnol. 2006 Aug;24(8):963-70. doi: 10.1038/nbt1233. Nat Biotechnol. 2006. PMID: 16900145

5

Tissue-specific transcriptional regulation has diverged significantly between human and mouse.

Odom DT, Dowell RD, Jacobsen ES, Gordon W, Danford TW, MacIsaac KD, Rolfe PA, Conboy CM, Gifford DK, Fraenkel E. Odom DT, et al. Among authors: macisaac kd. Nat Genet. 2007 Jun;39(6):730-2. doi: 10.1038/ng2047. Epub 2007 May 21. Nat Genet. 2007. PMID: 17529977 Free PMC article.

6

Sequence analysis of chromatin immunoprecipitation data for transcription factors.

Macisaac KD, Fraenkel E. Macisaac KD, et al. Methods Mol Biol. 2010;674:179-93. doi: 10.1007/978-1-60761-854-6_11. Methods Mol Biol. 2010. PMID: 20827592 Free PMC article.

7

A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data.

Macisaac KD, Gordon DB, Nekludova L, Odom DT, Schreiber J, Gifford DK, Young RA, Fraenkel E. Macisaac KD, et al. Bioinformatics. 2006 Feb 15;22(4):423-9. doi: 10.1093/bioinformatics/bti815. Epub 2005 Dec 6. Bioinformatics. 2006. PMID: 16332710

8

An improved map of conserved regulatory sites for Saccharomyces cerevisiae.

MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E. MacIsaac KD, et al. BMC Bioinformatics. 2006 Mar 7;7:113. doi: 10.1186/1471-2105-7-113. BMC Bioinformatics. 2006. PMID: 16522208 Free PMC article.

9

Foxp3 occupancy and regulation of key target genes during T-cell stimulation.

Marson A, Kretschmer K, Frampton GM, Jacobsen ES, Polansky JK, MacIsaac KD, Levine SS, Fraenkel E, von Boehmer H, Young RA. Marson A, et al. Among authors: macisaac kd. Nature. 2007 Feb 22;445(7130):931-5. doi: 10.1038/nature05478. Epub 2007 Jan 21. Nature. 2007. PMID: 17237765 Free PMC article.

10

Genomic characterization of Wilms' tumor suppressor 1 targets in nephron progenitor cells during kidney development.

Hartwig S, Ho J, Pandey P, Macisaac K, Taglienti M, Xiang M, Alterovitz G, Ramoni M, Fraenkel E, Kreidberg JA. Hartwig S, et al. Development. 2010 Apr;137(7):1189-203. doi: 10.1242/dev.045732. Development. 2010. PMID: 20215353 Free PMC article.

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