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Page 1
Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data.
PLoS One. 2020 Apr 30;15(4):e0232332. doi: 10.1371/journal.pone.0232332. eCollection 2020.
PLoS One. 2020.
PMID: 32353042
Free PMC article.
The MUC5B-associated variant rs35705950 resides within an enhancer subject to lineage- and disease-dependent epigenetic remodeling.
Gally F, Sasse SK, Kurche JS, Gruca MA, Cardwell JH, Okamoto T, Chu HW, Hou X, Poirion OB, Buchanan J, Preissl S, Ren B, Colgan SP, Dowell RD, Yang IV, Schwartz DA, Gerber AN.
Gally F, et al. Among authors: gruca ma.
JCI Insight. 2021 Jan 25;6(2):e144294. doi: 10.1172/jci.insight.144294.
JCI Insight. 2021.
PMID: 33320836
Free PMC article.
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Integrated genomics approaches identify transcriptional mediators and epigenetic responses to Afghan desert particulate matter in small airway epithelial cells.
Gupta A, Sasse SK, Berman R, Gruca MA, Dowell RD, Chu HW, Downey GP, Gerber AN.
Gupta A, et al. Among authors: gruca ma.
Physiol Genomics. 2022 Oct 1;54(10):389-401. doi: 10.1152/physiolgenomics.00063.2022. Epub 2022 Sep 5.
Physiol Genomics. 2022.
PMID: 36062885
Free PMC article.
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Nascent transcript analysis of glucocorticoid crosstalk with TNF defines primary and cooperative inflammatory repression.
Sasse SK, Gruca M, Allen MA, Kadiyala V, Song T, Gally F, Gupta A, Pufall MA, Dowell RD, Gerber AN.
Sasse SK, et al. Among authors: gruca m.
Genome Res. 2019 Nov;29(11):1753-1765. doi: 10.1101/gr.248187.119. Epub 2019 Sep 13.
Genome Res. 2019.
PMID: 31519741
Free PMC article.
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Deconvolution of multiplexed transcriptional responses to wood smoke particles defines rapid aryl hydrocarbon receptor signaling dynamics.
Gupta A, Sasse SK, Gruca MA, Sanford L, Dowell RD, Gerber AN.
Gupta A, et al. Among authors: gruca ma.
J Biol Chem. 2021 Oct;297(4):101147. doi: 10.1016/j.jbc.2021.101147. Epub 2021 Sep 11.
J Biol Chem. 2021.
PMID: 34520756
Free PMC article.
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The Δ40p53 isoform inhibits p53-dependent eRNA transcription and enables regulation by signal-specific transcription factors during p53 activation.
Levandowski CB, Jones T, Gruca M, Ramamoorthy S, Dowell RD, Taatjes DJ.
Levandowski CB, et al. Among authors: gruca m.
PLoS Biol. 2021 Aug 5;19(8):e3001364. doi: 10.1371/journal.pbio.3001364. eCollection 2021 Aug.
PLoS Biol. 2021.
PMID: 34351910
Free PMC article.
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Distinct amino acid compositional requirements for formation and maintenance of the [PSI⁺] prion in yeast.
MacLea KS, Paul KR, Ben-Musa Z, Waechter A, Shattuck JE, Gruca M, Ross ED.
MacLea KS, et al. Among authors: gruca m.
Mol Cell Biol. 2015 Mar;35(5):899-911. doi: 10.1128/MCB.01020-14. Epub 2014 Dec 29.
Mol Cell Biol. 2015.
PMID: 25547291
Free PMC article.
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