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Spatial multimodal analysis of transcriptomes and metabolomes in tissues.
Nat Biotechnol. 2023 Sep 4. doi: 10.1038/s41587-023-01937-y. Online ahead of print.
Nat Biotechnol. 2023.
PMID: 37667091
Parallelized calculation of permutation tests.
Ekvall M, Höhle M, Käll L.
Ekvall M, et al.
Bioinformatics. 2021 Apr 1;36(22-23):5392-5397. doi: 10.1093/bioinformatics/btaa1007.
Bioinformatics. 2021.
PMID: 33289531
Free PMC article.
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Prosit Transformer: A transformer for Prediction of MS2 Spectrum Intensities.
Ekvall M, Truong P, Gabriel W, Wilhelm M, Käll L.
Ekvall M, et al.
J Proteome Res. 2022 May 6;21(5):1359-1364. doi: 10.1021/acs.jproteome.1c00870. Epub 2022 Apr 12.
J Proteome Res. 2022.
PMID: 35413196
Free PMC article.
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Spatial landmark detection and tissue registration with deep learning.
Ekvall M, Bergenstråhle L, Andersson A, Czarnewski P, Olegård J, Käll L, Lundeberg J.
Ekvall M, et al.
Nat Methods. 2024 Apr;21(4):673-679. doi: 10.1038/s41592-024-02199-5. Epub 2024 Mar 4.
Nat Methods. 2024.
PMID: 38438615
Free PMC article.
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