Matt Thomson[Author] - Search Results

Year	Number of Results
2011	1
2014	1
2015	1
2016	1
2019	1
2020	3
2021	2
2022	4
2023	14
2024	1

1

Stem cell-derived synthetic embryos self-assemble by exploiting cadherin codes and cortical tension.

Bao M, Cornwall-Scoones J, Sanchez-Vasquez E, Cox AL, Chen DY, De Jonghe J, Shadkhoo S, Hollfelder F, Thomson M, Glover DM, Zernicka-Goetz M. Bao M, et al. Among authors: thomson m. Nat Cell Biol. 2022 Sep;24(9):1341-1349. doi: 10.1038/s41556-022-00984-y. Epub 2022 Sep 13. Nat Cell Biol. 2022. PMID: 36100738 Free PMC article.

2

Commensal bacteria promote type I interferon signaling to maintain immune tolerance in mice.

Vasquez Ayala A, Hsu CY, Oles RE, Matsuo K, Loomis LR, Buzun E, Carrillo Terrazas M, Gerner RR, Lu HH, Kim S, Zhang Z, Park JH, Rivaud P, Thomson M, Lu LF, Min B, Chu H. Vasquez Ayala A, et al. Among authors: thomson m. J Exp Med. 2024 Jan 1;221(1):e20230063. doi: 10.1084/jem.20230063. Epub 2023 Dec 12. J Exp Med. 2024. PMID: 38085267 Free PMC article.

3

Recovery of missing single-cell RNA-sequencing data with optimized transcriptomic references.

Pool AH, Poldsam H, Chen S, Thomson M, Oka Y. Pool AH, et al. Among authors: thomson m. Nat Methods. 2023 Oct;20(10):1506-1515. doi: 10.1038/s41592-023-02003-w. Epub 2023 Sep 11. Nat Methods. 2023. PMID: 37697162

4

A DNA repair pathway can regulate transcriptional noise to promote cell fate transitions.

Desai RV, Chen X, Martin B, Chaturvedi S, Hwang DW, Li W, Yu C, Ding S, Thomson M, Singer RH, Coleman RA, Hansen MMK, Weinberger LS. Desai RV, et al. Among authors: thomson m. Science. 2021 Aug 20;373(6557):eabc6506. doi: 10.1126/science.abc6506. Epub 2021 Jul 22. Science. 2021. PMID: 34301855 Free PMC article.

5

Author Correction: Stem cell-derived synthetic embryos self-assemble by exploiting cadherin codes and cortical tension.

Bao M, Cornwall-Scoones J, Sanchez-Vasquez E, Cox AL, Chen DY, De Jonghe J, Shadkhoo S, Hollfelder F, Thomson M, Glover DM, Zernicka-Goetz M. Bao M, et al. Among authors: thomson m. Nat Cell Biol. 2023 Jun;25(6):917. doi: 10.1038/s41556-023-01157-1. Nat Cell Biol. 2023. PMID: 37221392 Free PMC article. No abstract available.

6

Spatial transcriptomics defines injury-specific microenvironments in the adult mouse kidney and novel cellular interactions in regeneration and disease.

Polonsky M, Gerhardt LMS, Yun J, Koppitch K, Colón KL, Amrhein H, Zheng S, Yuan GC, Thomson M, Cai L, McMahon AP. Polonsky M, et al. Among authors: thomson m. bioRxiv [Preprint]. 2023 Nov 22:2023.11.22.568217. doi: 10.1101/2023.11.22.568217. bioRxiv. 2023. PMID: 38045285 Free PMC article. Preprint.

7

Minimal gene set discovery in single-cell mRNA-seq datasets with ActiveSVM.

Chen X, Chen S, Thomson M. Chen X, et al. Among authors: thomson m. Nat Comput Sci. 2022 Jun;2(6):387-398. doi: 10.1038/s43588-022-00263-8. Epub 2022 Jun 27. Nat Comput Sci. 2022. PMID: 38177588 Free PMC article.

8

Patterning and folding of intestinal villi by active mesenchymal dewetting.

Huycke TR, Miyazaki H, Häkkinen TJ, Srivastava V, Barruet E, McGinnis CS, Kalantari A, Cornwall-Scoones J, Vaka D, Zhu Q, Jo H, DeGrado WF, Thomson M, Garikipati K, Boffelli D, Klein OD, Gartner ZJ. Huycke TR, et al. Among authors: thomson m. bioRxiv [Preprint]. 2023 Aug 15:2023.06.25.546328. doi: 10.1101/2023.06.25.546328. bioRxiv. 2023. PMID: 37425793 Free PMC article. Preprint.

9

Spatio-temporal patterning of extensile active stresses in microtubule-based active fluids.

Lemma LM, Varghese M, Ross TD, Thomson M, Baskaran A, Dogic Z. Lemma LM, et al. Among authors: thomson m. PNAS Nexus. 2023 Apr 12;2(5):pgad130. doi: 10.1093/pnasnexus/pgad130. eCollection 2023 May. PNAS Nexus. 2023. PMID: 37168671 Free PMC article.

10

Environmental statistics and optimal regulation.

Sivak DA, Thomson M. Sivak DA, et al. Among authors: thomson m. PLoS Comput Biol. 2014 Sep 25;10(9):e1003826. doi: 10.1371/journal.pcbi.1003826. eCollection 2014 Sep. PLoS Comput Biol. 2014. PMID: 25254493 Free PMC article.

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