Meiler J - Search Results

1

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks.

Koehler Leman J, Lyskov S, Lewis SM, Adolf-Bryfogle J, Alford RF, Barlow K, Ben-Aharon Z, Farrell D, Fell J, Hansen WA, Harmalkar A, Jeliazkov J, Kuenze G, Krys JD, Ljubetič A, Loshbaugh AL, Maguire J, Moretti R, Mulligan VK, Nance ML, Nguyen PT, Ó Conchúir S, Roy Burman SS, Samanta R, Smith ST, Teets F, Tiemann JKS, Watkins A, Woods H, Yachnin BJ, Bahl CD, Bailey-Kellogg C, Baker D, Das R, DiMaio F, Khare SD, Kortemme T, Labonte JW, Lindorff-Larsen K, Meiler J, Schief W, Schueler-Furman O, Siegel JB, Stein A, Yarov-Yarovoy V, Kuhlman B, Leaver-Fay A, Gront D, Gray JJ, Bonneau R. Koehler Leman J, et al. Among authors: meiler j. Nat Commun. 2021 Nov 29;12(1):6947. doi: 10.1038/s41467-021-27222-7. Nat Commun. 2021. PMID: 34845212 Free PMC article.

2

Coupled prediction of protein secondary and tertiary structure.

Meiler J, Baker D. Meiler J, et al. Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12105-10. doi: 10.1073/pnas.1831973100. Epub 2003 Oct 3. Proc Natl Acad Sci U S A. 2003. PMID: 14528006 Free PMC article.

3

Rosetta predictions in CASP5: successes, failures, and prospects for complete automation.

Bradley P, Chivian D, Meiler J, Misura KM, Rohl CA, Schief WR, Wedemeyer WJ, Schueler-Furman O, Murphy P, Schonbrun J, Strauss CE, Baker D. Bradley P, et al. Among authors: meiler j. Proteins. 2003;53 Suppl 6:457-68. doi: 10.1002/prot.10552. Proteins. 2003. PMID: 14579334

4

Rapid protein fold determination using unassigned NMR data.

Meiler J, Baker D. Meiler J, et al. Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15404-9. doi: 10.1073/pnas.2434121100. Epub 2003 Dec 10. Proc Natl Acad Sci U S A. 2003. PMID: 14668443 Free PMC article.

5

Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins.

Kuhn M, Meiler J, Baker D. Kuhn M, et al. Among authors: meiler j. Proteins. 2004 Feb 1;54(2):282-8. doi: 10.1002/prot.10589. Proteins. 2004. PMID: 14696190

6

The fumarate sensor DcuS: progress in rapid protein fold elucidation by combining protein structure prediction methods with NMR spectroscopy.

Meiler J, Baker D. Meiler J, et al. J Magn Reson. 2005 Apr;173(2):310-6. doi: 10.1016/j.jmr.2004.11.031. J Magn Reson. 2005. PMID: 15780923

7

Free modeling with Rosetta in CASP6.

Bradley P, Malmström L, Qian B, Schonbrun J, Chivian D, Kim DE, Meiler J, Misura KMS, Baker D. Bradley P, et al. Among authors: meiler j. Proteins. 2005;61 Suppl 7:128-134. doi: 10.1002/prot.20729. Proteins. 2005. PMID: 16187354

8

ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility.

Meiler J, Baker D. Meiler J, et al. Proteins. 2006 Nov 15;65(3):538-48. doi: 10.1002/prot.21086. Proteins. 2006. PMID: 16972285

9

New algorithms and an in silico benchmark for computational enzyme design.

Zanghellini A, Jiang L, Wollacott AM, Cheng G, Meiler J, Althoff EA, Röthlisberger D, Baker D. Zanghellini A, et al. Among authors: meiler j. Protein Sci. 2006 Dec;15(12):2785-94. doi: 10.1110/ps.062353106. Protein Sci. 2006. PMID: 17132862 Free PMC article.

10

A correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its family.

Friedland GD, Lakomek NA, Griesinger C, Meiler J, Kortemme T. Friedland GD, et al. Among authors: meiler j. PLoS Comput Biol. 2009 May;5(5):e1000393. doi: 10.1371/journal.pcbi.1000393. Epub 2009 May 29. PLoS Comput Biol. 2009. PMID: 19478996 Free PMC article.

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