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Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical Samples.
Kimbrel J, Moon J, Avila-Herrera A, Martí JM, Thissen J, Mulakken N, Sandholtz SH, Ferrell T, Daum C, Hall S, Segelke B, Arrildt KT, Messenger S, Wadford DA, Jaing C, Allen JE, Borucki MK. Kimbrel J, et al. Among authors: messenger s. Viruses. 2022 Dec 13;14(12):2775. doi: 10.3390/v14122775. Viruses. 2022. PMID: 36560780 Free PMC article.
A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples.
Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, Leroy E, Schneider BS, Fair JN, Martínez MA, Isa P, Crump JA, DeRisi JL, Sittler T, Hackett J Jr, Miller S, Chiu CY. Naccache SN, et al. Among authors: messenger sl. Genome Res. 2014 Jul;24(7):1180-92. doi: 10.1101/gr.171934.113. Epub 2014 Jun 4. Genome Res. 2014. PMID: 24899342 Free PMC article.
Rickettsia spp. 364D causing a cluster of eschar-associated illness, California.
Johnston SH, Glaser CA, Padgett K, Wadford DA, Espinosa A, Espinosa N, Eremeeva ME, Tait K, Hobson B, Shtivelman S, Hsieh C, Messenger SL. Johnston SH, et al. Among authors: messenger sl. Pediatr Infect Dis J. 2013 Sep;32(9):1036-9. doi: 10.1097/INF.0b013e318296b24b. Pediatr Infect Dis J. 2013. PMID: 23594588
A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012-14): a retrospective cohort study.
Greninger AL, Naccache SN, Messacar K, Clayton A, Yu G, Somasekar S, Federman S, Stryke D, Anderson C, Yagi S, Messenger S, Wadford D, Xia D, Watt JP, Van Haren K, Dominguez SR, Glaser C, Aldrovandi G, Chiu CY. Greninger AL, et al. Among authors: messenger s. Lancet Infect Dis. 2015 Jun;15(6):671-82. doi: 10.1016/S1473-3099(15)70093-9. Epub 2015 Mar 31. Lancet Infect Dis. 2015. PMID: 25837569 Free PMC article.
Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.
Deng X, Achari A, Federman S, Yu G, Somasekar S, Bártolo I, Yagi S, Mbala-Kingebeni P, Kapetshi J, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Ahmed AA, Ganesh V, Tamhankar M, Patterson JL, Ndembi N, Mbanya D, Kaptue L, McArthur C, Muñoz-Medina JE, Gonzalez-Bonilla CR, López S, Arias CF, Arevalo S, Miller S, Stone M, Busch M, Hsieh K, Messenger S, Wadford DA, Rodgers M, Cloherty G, Faria NR, Thézé J, Pybus OG, Neto Z, Morais J, Taveira N, R Hackett J Jr, Chiu CY. Deng X, et al. Among authors: messenger s. Nat Microbiol. 2020 Mar;5(3):443-454. doi: 10.1038/s41564-019-0637-9. Epub 2020 Jan 13. Nat Microbiol. 2020. PMID: 31932713 Free PMC article.
Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.
Deng X, Achari A, Federman S, Yu G, Somasekar S, Bártolo I, Yagi S, Mbala-Kingebeni P, Kapetshi J, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Ahmed AA, Ganesh V, Tamhankar M, Patterson JL, Ndembi N, Mbanya D, Kaptue L, McArthur C, Muñoz-Medina JE, Gonzalez-Bonilla CR, López S, Arias CF, Arevalo S, Miller S, Stone M, Busch M, Hsieh K, Messenger S, Wadford DA, Rodgers M, Cloherty G, Faria NR, Thézé J, Pybus OG, Neto Z, Morais J, Taveira N, Hackett JR Jr, Chiu CY. Deng X, et al. Among authors: messenger s. Nat Microbiol. 2020 Mar;5(3):525. doi: 10.1038/s41564-020-0671-7. Nat Microbiol. 2020. PMID: 31965087 Free PMC article.
Epidemiologic and environmental characterization of the Re-emergence of St. Louis Encephalitis Virus in California, 2015-2020.
Danforth ME, Snyder RE, Feiszli T, Bullick T, Messenger S, Hanson C, Padgett K, Coffey LL, Barker CM, Reisen WK, Kramer VL. Danforth ME, et al. Among authors: messenger s. PLoS Negl Trop Dis. 2022 Aug 8;16(8):e0010664. doi: 10.1371/journal.pntd.0010664. eCollection 2022 Aug. PLoS Negl Trop Dis. 2022. PMID: 35939506 Free PMC article.
Expanded Molecular Testing on Patients with Suspected West Nile Virus Disease.
Lindsey NP, Messenger SL, Hacker JK, Salas ML, Scott-Waldron C, Haydel D, Rider E, Simonson S, Brown CM, Patel P, Smole SC, Neitzel DF, Schiffman EK, Palm J, Strain AK, Vetter SM, Nefzger B, Fischer M, Rabe IB. Lindsey NP, et al. Among authors: messenger sl. Vector Borne Zoonotic Dis. 2019 Sep;19(9):690-693. doi: 10.1089/vbz.2018.2412. Epub 2019 May 13. Vector Borne Zoonotic Dis. 2019. PMID: 31081745 Free PMC article.
96 results