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Year Number of Results
2013 1
2016 1
2017 1
2018 1
2019 3
2020 2
2021 4
2022 1
2023 6
2024 5

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Page 1
ColabFold: making protein folding accessible to all.
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. Mirdita M, et al. Nat Methods. 2022 Jun;19(6):679-682. doi: 10.1038/s41592-022-01488-1. Epub 2022 May 30. Nat Methods. 2022. PMID: 35637307 Free PMC article.
Petabase-Scale Homology Search for Structure Prediction.
Lee S, Kim G, Karin EL, Mirdita M, Park S, Chikhi R, Babaian A, Kryshtafovych A, Steinegger M. Lee S, et al. Among authors: mirdita m. Cold Spring Harb Perspect Biol. 2024 May 2;16(5):a041465. doi: 10.1101/cshperspect.a041465. Cold Spring Harb Perspect Biol. 2024. PMID: 38316555 Review.
Petascale Homology Search for Structure Prediction.
Lee S, Kim G, Karin EL, Mirdita M, Park S, Chikhi R, Babaian A, Kryshtafovych A, Steinegger M. Lee S, et al. Among authors: mirdita m. bioRxiv [Preprint]. 2023 Jul 11:2023.07.10.548308. doi: 10.1101/2023.07.10.548308. bioRxiv. 2023. PMID: 37503235 Free PMC article. Updated. Preprint.
Fast and accurate protein structure search with Foldseek.
van Kempen M, Kim SS, Tumescheit C, Mirdita M, Lee J, Gilchrist CLM, Söding J, Steinegger M. van Kempen M, et al. Among authors: mirdita m. Nat Biotechnol. 2024 Feb;42(2):243-246. doi: 10.1038/s41587-023-01773-0. Epub 2023 May 8. Nat Biotechnol. 2024. PMID: 37156916 Free PMC article.
Clustering predicted structures at the scale of the known protein universe.
Barrio-Hernandez I, Yeo J, Jänes J, Mirdita M, Gilchrist CLM, Wein T, Varadi M, Velankar S, Beltrao P, Steinegger M. Barrio-Hernandez I, et al. Among authors: mirdita m. Nature. 2023 Oct;622(7983):637-645. doi: 10.1038/s41586-023-06510-w. Epub 2023 Sep 13. Nature. 2023. PMID: 37704730 Free PMC article.
LambdaPP: Fast and accessible protein-specific phenotype predictions.
Olenyi T, Marquet C, Heinzinger M, Kröger B, Nikolova T, Bernhofer M, Sändig P, Schütze K, Littmann M, Mirdita M, Steinegger M, Dallago C, Rost B. Olenyi T, et al. Among authors: mirdita m. Protein Sci. 2023 Jan;32(1):e4524. doi: 10.1002/pro.4524. Protein Sci. 2023. PMID: 36454227 Free PMC article.
PredictProtein - Predicting Protein Structure and Function for 29 Years.
Bernhofer M, Dallago C, Karl T, Satagopam V, Heinzinger M, Littmann M, Olenyi T, Qiu J, Schütze K, Yachdav G, Ashkenazy H, Ben-Tal N, Bromberg Y, Goldberg T, Kajan L, O'Donoghue S, Sander C, Schafferhans A, Schlessinger A, Vriend G, Mirdita M, Gawron P, Gu W, Jarosz Y, Trefois C, Steinegger M, Schneider R, Rost B. Bernhofer M, et al. Among authors: mirdita m. Nucleic Acids Res. 2021 Jul 2;49(W1):W535-W540. doi: 10.1093/nar/gkab354. Nucleic Acids Res. 2021. PMID: 33999203 Free PMC article.
DescribePROT: database of amino acid-level protein structure and function predictions.
Zhao B, Katuwawala A, Oldfield CJ, Dunker AK, Faraggi E, Gsponer J, Kloczkowski A, Malhis N, Mirdita M, Obradovic Z, Söding J, Steinegger M, Zhou Y, Kurgan L. Zhao B, et al. Among authors: mirdita m. Nucleic Acids Res. 2021 Jan 8;49(D1):D298-D308. doi: 10.1093/nar/gkaa931. Nucleic Acids Res. 2021. PMID: 33119734 Free PMC article.
Protein Sequence Analysis Using the MPI Bioinformatics Toolkit.
Gabler F, Nam SZ, Till S, Mirdita M, Steinegger M, Söding J, Lupas AN, Alva V. Gabler F, et al. Among authors: mirdita m. Curr Protoc Bioinformatics. 2020 Dec;72(1):e108. doi: 10.1002/cpbi.108. Curr Protoc Bioinformatics. 2020. PMID: 33315308
23 results