Mondal D - Search Results

1

Soluble TREM2 inhibits secondary nucleation of Aβ fibrillization and enhances cellular uptake of fibrillar Aβ.

Belsare KD, Wu H, Mondal D, Bond A, Castillo E, Jin J, Jo H, Roush AE, Pilla KB, Sali A, Condello C, DeGrado WF. Belsare KD, et al. Among authors: mondal d. Proc Natl Acad Sci U S A. 2022 Feb 1;119(5):e2114486119. doi: 10.1073/pnas.2114486119. Proc Natl Acad Sci U S A. 2022. PMID: 35082148 Free PMC article.

2

EF-Tu and EF-G are activated by allosteric effects.

Mondal D, Warshel A. Mondal D, et al. Proc Natl Acad Sci U S A. 2018 Mar 27;115(13):3386-3391. doi: 10.1073/pnas.1800054115. Epub 2018 Mar 12. Proc Natl Acad Sci U S A. 2018. PMID: 29531062 Free PMC article.

3

Exploring the activation pathway and G_i-coupling specificity of the μ-opioid receptor.

Mondal D, Kolev V, Warshel A. Mondal D, et al. Proc Natl Acad Sci U S A. 2020 Oct 20;117(42):26218-26225. doi: 10.1073/pnas.2013364117. Epub 2020 Oct 5. Proc Natl Acad Sci U S A. 2020. PMID: 33020275 Free PMC article.

4

Exploring the Drug Resistance of HCV Protease.

Jindal G, Mondal D, Warshel A. Jindal G, et al. Among authors: mondal d. J Phys Chem B. 2017 Jul 20;121(28):6831-6840. doi: 10.1021/acs.jpcb.7b04562. Epub 2017 Jul 5. J Phys Chem B. 2017. PMID: 28635289 Free PMC article.

5

Exploring alternative catalytic mechanisms of the Cas9 HNH domain.

Zhao LN, Mondal D, Warshel A. Zhao LN, et al. Among authors: mondal d. Proteins. 2020 Feb;88(2):260-264. doi: 10.1002/prot.25796. Epub 2019 Sep 6. Proteins. 2020. PMID: 31390092 Free PMC article.

6

Exploring the Effectiveness of Binding Free Energy Calculations.

Mondal D, Florian J, Warshel A. Mondal D, et al. J Phys Chem B. 2019 Oct 24;123(42):8910-8915. doi: 10.1021/acs.jpcb.9b07593. Epub 2019 Oct 14. J Phys Chem B. 2019. PMID: 31560539 Free PMC article.

7

Exploring the Proteolysis Mechanism of the Proteasomes.

Saha A, Oanca G, Mondal D, Warshel A. Saha A, et al. Among authors: mondal d. J Phys Chem B. 2020 Jul 9;124(27):5626-5635. doi: 10.1021/acs.jpcb.0c04435. Epub 2020 Jun 25. J Phys Chem B. 2020. PMID: 32498514 Free PMC article.

8

Exploring the Mechanism of Covalent Inhibition: Simulating the Binding Free Energy of α-Ketoamide Inhibitors of the Main Protease of SARS-CoV-2.

Mondal D, Warshel A. Mondal D, et al. Biochemistry. 2020 Dec 8;59(48):4601-4608. doi: 10.1021/acs.biochem.0c00782. Epub 2020 Nov 18. Biochemistry. 2020. PMID: 33205654 Free PMC article.

9

Combinatorial Approach for Exploring Conformational Space and Activation Barriers in Computer-Aided Enzyme Design.

Mondal D, Kolev V, Warshel A. Mondal D, et al. ACS Catal. 2020 Jun 5;10(11):6002-6012. doi: 10.1021/acscatal.0c01206. Epub 2020 Apr 27. ACS Catal. 2020. PMID: 34178420 Free PMC article.

10

Exploring the Activation Process of the β2AR-G_s Complex.

Bai C, Wang J, Mondal D, Du Y, Ye RD, Warshel A. Bai C, et al. Among authors: mondal d. J Am Chem Soc. 2021 Jul 28;143(29):11044-11051. doi: 10.1021/jacs.1c03696. Epub 2021 Jul 13. J Am Chem Soc. 2021. PMID: 34255502

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