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CTCF is a DNA-tension-dependent barrier to cohesin-mediated loop extrusion.
Davidson IF, Barth R, Zaczek M, van der Torre J, Tang W, Nagasaka K, Janissen R, Kerssemakers J, Wutz G, Dekker C, Peters JM. Davidson IF, et al. Among authors: nagasaka k. Nature. 2023 Apr;616(7958):822-827. doi: 10.1038/s41586-023-05961-5. Epub 2023 Apr 19. Nature. 2023. PMID: 37076620 Free PMC article.
Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.
Wutz G, Várnai C, Nagasaka K, Cisneros DA, Stocsits RR, Tang W, Schoenfelder S, Jessberger G, Muhar M, Hossain MJ, Walther N, Koch B, Kueblbeck M, Ellenberg J, Zuber J, Fraser P, Peters JM. Wutz G, et al. Among authors: nagasaka k. EMBO J. 2017 Dec 15;36(24):3573-3599. doi: 10.15252/embj.201798004. Epub 2017 Dec 7. EMBO J. 2017. PMID: 29217591 Free PMC article.
Absolute quantification of cohesin, CTCF and their regulators in human cells.
Holzmann J, Politi AZ, Nagasaka K, Hantsche-Grininger M, Walther N, Koch B, Fuchs J, Dürnberger G, Tang W, Ladurner R, Stocsits RR, Busslinger GA, Novák B, Mechtler K, Davidson IF, Ellenberg J, Peters JM. Holzmann J, et al. Among authors: nagasaka k. Elife. 2019 Jun 17;8:e46269. doi: 10.7554/eLife.46269. Elife. 2019. PMID: 31204999 Free PMC article.
ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL.
Wutz G, Ladurner R, St Hilaire BG, Stocsits RR, Nagasaka K, Pignard B, Sanborn A, Tang W, Várnai C, Ivanov MP, Schoenfelder S, van der Lelij P, Huang X, Dürnberger G, Roitinger E, Mechtler K, Davidson IF, Fraser P, Lieberman-Aiden E, Peters JM. Wutz G, et al. Among authors: nagasaka k. Elife. 2020 Feb 17;9:e52091. doi: 10.7554/eLife.52091. Elife. 2020. PMID: 32065581 Free PMC article.
Wapl repression by Pax5 promotes V gene recombination by Igh loop extrusion.
Hill L, Ebert A, Jaritz M, Wutz G, Nagasaka K, Tagoh H, Kostanova-Poliakova D, Schindler K, Sun Q, Bönelt P, Fischer M, Peters JM, Busslinger M. Hill L, et al. Among authors: nagasaka k. Nature. 2020 Aug;584(7819):142-147. doi: 10.1038/s41586-020-2454-y. Epub 2020 Jul 1. Nature. 2020. PMID: 32612238 Free PMC article.
Werner syndrome helicase is a selective vulnerability of microsatellite instability-high tumor cells.
Lieb S, Blaha-Ostermann S, Kamper E, Rippka J, Schwarz C, Ehrenhöfer-Wölfer K, Schlattl A, Wernitznig A, Lipp JJ, Nagasaka K, van der Lelij P, Bader G, Koi M, Goel A, Neumüller RA, Peters JM, Kraut N, Pearson MA, Petronczki M, Wöhrle S. Lieb S, et al. Among authors: nagasaka k. Elife. 2019 Mar 25;8:e43333. doi: 10.7554/eLife.43333. Elife. 2019. PMID: 30910006 Free PMC article.
258 results