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Sc-compReg enables the comparison of gene regulatory networks between conditions using single-cell data.
Nat Commun. 2021 Aug 6;12(1):4763. doi: 10.1038/s41467-021-25089-2.
Nat Commun. 2021.
PMID: 34362918
Free PMC article.
Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion.
Satpathy AT, Granja JM, Yost KE, Qi Y, Meschi F, McDermott GP, Olsen BN, Mumbach MR, Pierce SE, Corces MR, Shah P, Bell JC, Jhutty D, Nemec CM, Wang J, Wang L, Yin Y, Giresi PG, Chang ALS, Zheng GXY, Greenleaf WJ, Chang HY.
Satpathy AT, et al. Among authors: nemec cm.
Nat Biotechnol. 2019 Aug;37(8):925-936. doi: 10.1038/s41587-019-0206-z. Epub 2019 Aug 2.
Nat Biotechnol. 2019.
PMID: 31375813
Free PMC article.
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Integrated Single-Cell Transcriptomics and Chromatin Accessibility Analysis Reveals Regulators of Mammary Epithelial Cell Identity.
Pervolarakis N, Nguyen QH, Williams J, Gong Y, Gutierrez G, Sun P, Jhutty D, Zheng GXY, Nemec CM, Dai X, Watanabe K, Kessenbrock K.
Pervolarakis N, et al. Among authors: nemec cm.
Cell Rep. 2020 Oct 20;33(3):108273. doi: 10.1016/j.celrep.2020.108273.
Cell Rep. 2020.
PMID: 33086071
Free PMC article.
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Pathway connectivity and signaling coordination in the yeast stress-activated signaling network.
Chasman D, Ho YH, Berry DB, Nemec CM, MacGilvray ME, Hose J, Merrill AE, Lee MV, Will JL, Coon JJ, Ansari AZ, Craven M, Gasch AP.
Chasman D, et al. Among authors: nemec cm.
Mol Syst Biol. 2014 Nov 19;10(11):759. doi: 10.15252/msb.20145120.
Mol Syst Biol. 2014.
PMID: 25411400
Free PMC article.
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Noncanonical CTD kinases regulate RNA polymerase II in a gene-class-specific manner.
Nemec CM, Singh AK, Ali A, Tseng SC, Syal K, Ringelberg KJ, Ho YH, Hintermair C, Ahmad MF, Kar RK, Gasch AP, Akhtar MS, Eick D, Ansari AZ.
Nemec CM, et al.
Nat Chem Biol. 2019 Feb;15(2):123-131. doi: 10.1038/s41589-018-0194-1. Epub 2018 Dec 31.
Nat Chem Biol. 2019.
PMID: 30598543
Free PMC article.
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Different phosphoisoforms of RNA polymerase II engage the Rtt103 termination factor in a structurally analogous manner.
Nemec CM, Yang F, Gilmore JM, Hintermair C, Ho YH, Tseng SC, Heidemann M, Zhang Y, Florens L, Gasch AP, Eick D, Washburn MP, Varani G, Ansari AZ.
Nemec CM, et al.
Proc Natl Acad Sci U S A. 2017 May 16;114(20):E3944-E3953. doi: 10.1073/pnas.1700128114. Epub 2017 May 2.
Proc Natl Acad Sci U S A. 2017.
PMID: 28465432
Free PMC article.
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Emerging Views on the CTD Code.
Zhang DW, Rodríguez-Molina JB, Tietjen JR, Nemec CM, Ansari AZ.
Zhang DW, et al. Among authors: nemec cm.
Genet Res Int. 2012;2012:347214. doi: 10.1155/2012/347214. Epub 2012 Feb 26.
Genet Res Int. 2012.
PMID: 22567385
Free PMC article.
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