Nickels BE - Search Results

1

An RNA-seq method for defining endoribonuclease cleavage specificity identifies dual rRNA substrates for toxin MazF-mt3.

Schifano JM, Vvedenskaya IO, Knoblauch JG, Ouyang M, Nickels BE, Woychik NA. Schifano JM, et al. Among authors: nickels be. Nat Commun. 2014 Apr 8;5:3538. doi: 10.1038/ncomms4538. Nat Commun. 2014. PMID: 24709835 Free PMC article.

2

NanoRNAs prime transcription initiation in vivo.

Goldman SR, Sharp JS, Vvedenskaya IO, Livny J, Dove SL, Nickels BE. Goldman SR, et al. Among authors: nickels be. Mol Cell. 2011 Jun 24;42(6):817-25. doi: 10.1016/j.molcel.2011.06.005. Mol Cell. 2011. PMID: 21700226 Free PMC article.

3

Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs.

Vvedenskaya IO, Sharp JS, Goldman SR, Kanabar PN, Livny J, Dove SL, Nickels BE. Vvedenskaya IO, et al. Among authors: nickels be. Genes Dev. 2012 Jul 1;26(13):1498-507. doi: 10.1101/gad.192732.112. Genes Dev. 2012. PMID: 22751503 Free PMC article.

4

Interactions between RNA polymerase and the "core recognition element" counteract pausing.

Vvedenskaya IO, Vahedian-Movahed H, Bird JG, Knoblauch JG, Goldman SR, Zhang Y, Ebright RH, Nickels BE. Vvedenskaya IO, et al. Among authors: nickels be. Science. 2014 Jun 13;344(6189):1285-9. doi: 10.1126/science.1253458. Science. 2014. PMID: 24926020 Free PMC article.

5

Preparation of cDNA libraries for high-throughput RNA sequencing analysis of RNA 5' ends.

Vvedenskaya IO, Goldman SR, Nickels BE. Vvedenskaya IO, et al. Among authors: nickels be. Methods Mol Biol. 2015;1276:211-28. doi: 10.1007/978-1-4939-2392-2_12. Methods Mol Biol. 2015. PMID: 25665566 Free PMC article.

6

Ubiquitous promoter-localization of essential virulence regulators in Francisella tularensis.

Ramsey KM, Osborne ML, Vvedenskaya IO, Su C, Nickels BE, Dove SL. Ramsey KM, et al. Among authors: nickels be. PLoS Pathog. 2015 Apr 1;11(4):e1004793. doi: 10.1371/journal.ppat.1004793. eCollection 2015 Apr. PLoS Pathog. 2015. PMID: 25830507 Free PMC article.

7

A Conserved Pattern of Primer-Dependent Transcription Initiation in Escherichia coli and Vibrio cholerae Revealed by 5' RNA-seq.

Druzhinin SY, Tran NT, Skalenko KS, Goldman SR, Knoblauch JG, Dove SL, Nickels BE. Druzhinin SY, et al. Among authors: nickels be. PLoS Genet. 2015 Jul 1;11(7):e1005348. doi: 10.1371/journal.pgen.1005348. eCollection 2015 Jul. PLoS Genet. 2015. PMID: 26131907 Free PMC article.

8

Growth-regulating Mycobacterium tuberculosis VapC-mt4 toxin is an isoacceptor-specific tRNase.

Cruz JW, Sharp JD, Hoffer ED, Maehigashi T, Vvedenskaya IO, Konkimalla A, Husson RN, Nickels BE, Dunham CM, Woychik NA. Cruz JW, et al. Among authors: nickels be. Nat Commun. 2015 Jul 9;6:7480. doi: 10.1038/ncomms8480. Nat Commun. 2015. PMID: 26158745 Free PMC article.

9

Massively Systematic Transcript End Readout, "MASTER": Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields.

Vvedenskaya IO, Zhang Y, Goldman SR, Valenti A, Visone V, Taylor DM, Ebright RH, Nickels BE. Vvedenskaya IO, et al. Among authors: nickels be. Mol Cell. 2015 Dec 17;60(6):953-65. doi: 10.1016/j.molcel.2015.10.029. Epub 2015 Nov 25. Mol Cell. 2015. PMID: 26626484 Free PMC article.

10

tRNA is a new target for cleavage by a MazF toxin.

Schifano JM, Cruz JW, Vvedenskaya IO, Edifor R, Ouyang M, Husson RN, Nickels BE, Woychik NA. Schifano JM, et al. Among authors: nickels be. Nucleic Acids Res. 2016 Feb 18;44(3):1256-70. doi: 10.1093/nar/gkv1370. Epub 2016 Jan 5. Nucleic Acids Res. 2016. PMID: 26740583 Free PMC article.

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