Nielsen M - Search Results

1

Citrullination only infrequently impacts peptide binding to HLA class II MHC.

Sidney J, Becart S, Zhou M, Duffy K, Lindvall M, Moore EC, Moore EL, Rao T, Rao N, Nielsen M, Peters B, Sette A. Sidney J, et al. Among authors: nielsen m. PLoS One. 2017 May 8;12(5):e0177140. doi: 10.1371/journal.pone.0177140. eCollection 2017. PLoS One. 2017. PMID: 28481943 Free PMC article.

2

Selecting informative data for developing peptide-MHC binding predictors using a query by committee approach.

Christensen JK, Lamberth K, Nielsen M, Lundegaard C, Worning P, Lauemøller SL, Buus S, Brunak S, Lund O. Christensen JK, et al. Among authors: nielsen m. Neural Comput. 2003 Dec;15(12):2931-42. doi: 10.1162/089976603322518803. Neural Comput. 2003. PMID: 14629874

3

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.

Nielsen M, Lundegaard C, Worning P, Hvid CS, Lamberth K, Buus S, Brunak S, Lund O. Nielsen M, et al. Bioinformatics. 2004 Jun 12;20(9):1388-97. doi: 10.1093/bioinformatics/bth100. Epub 2004 Feb 12. Bioinformatics. 2004. PMID: 14962912

4

Definition of supertypes for HLA molecules using clustering of specificity matrices.

Lund O, Nielsen M, Kesmir C, Petersen AG, Lundegaard C, Worning P, Sylvester-Hvid C, Lamberth K, Røder G, Justesen S, Buus S, Brunak S. Lund O, et al. Among authors: nielsen m. Immunogenetics. 2004 Mar;55(12):797-810. doi: 10.1007/s00251-004-0647-4. Epub 2004 Feb 13. Immunogenetics. 2004. PMID: 14963618

5

An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions.

Larsen MV, Lundegaard C, Lamberth K, Buus S, Brunak S, Lund O, Nielsen M. Larsen MV, et al. Among authors: nielsen m. Eur J Immunol. 2005 Aug;35(8):2295-303. doi: 10.1002/eji.200425811. Eur J Immunol. 2005. PMID: 15997466 Free article.

6

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method.

Nielsen M, Lundegaard C, Lund O. Nielsen M, et al. BMC Bioinformatics. 2007 Jul 4;8:238. doi: 10.1186/1471-2105-8-238. BMC Bioinformatics. 2007. PMID: 17608956 Free PMC article.

7

NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence.

Nielsen M, Lundegaard C, Blicher T, Lamberth K, Harndahl M, Justesen S, Røder G, Peters B, Sette A, Lund O, Buus S. Nielsen M, et al. PLoS One. 2007 Aug 29;2(8):e796. doi: 10.1371/journal.pone.0000796. PLoS One. 2007. PMID: 17726526 Free PMC article.

8

Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers.

Lundegaard C, Lund O, Nielsen M. Lundegaard C, et al. Among authors: nielsen m. Bioinformatics. 2008 Jun 1;24(11):1397-8. doi: 10.1093/bioinformatics/btn128. Epub 2008 Apr 14. Bioinformatics. 2008. PMID: 18413329

9

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11.

Lundegaard C, Lamberth K, Harndahl M, Buus S, Lund O, Nielsen M. Lundegaard C, et al. Among authors: nielsen m. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W509-12. doi: 10.1093/nar/gkn202. Epub 2008 May 7. Nucleic Acids Res. 2008. PMID: 18463140 Free PMC article.

10

Immune epitope database analysis resource (IEDB-AR).

Zhang Q, Wang P, Kim Y, Haste-Andersen P, Beaver J, Bourne PE, Bui HH, Buus S, Frankild S, Greenbaum J, Lund O, Lundegaard C, Nielsen M, Ponomarenko J, Sette A, Zhu Z, Peters B. Zhang Q, et al. Among authors: nielsen m. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W513-8. doi: 10.1093/nar/gkn254. Epub 2008 May 31. Nucleic Acids Res. 2008. PMID: 18515843 Free PMC article.

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