Enhancer architecture sensitizes cell specific responses to Notch gene dose via a bind and discard mechanism

Elife. 2020 Apr 16:9:e53659. doi: 10.7554/eLife.53659.

Abstract

Notch pathway haploinsufficiency can cause severe developmental syndromes with highly variable penetrance. Currently, we have a limited mechanistic understanding of phenotype variability due to gene dosage. Here, we unexpectedly found that inserting an enhancer containing pioneer transcription factor sites coupled to Notch dimer sites can induce a subset of Notch haploinsufficiency phenotypes in Drosophila with wild type Notch gene dose. Using Drosophila genetics, we show that this enhancer induces Notch phenotypes in a Cdk8-dependent, transcription-independent manner. We further combined mathematical modeling with quantitative trait and expression analysis to build a model that describes how changes in Notch signal production versus degradation differentially impact cellular outcomes that require long versus short signal duration. Altogether, these findings support a 'bind and discard' mechanism in which enhancers with specific binding sites promote rapid Cdk8-dependent Notch turnover, and thereby reduce Notch-dependent transcription at other loci and sensitize tissues to gene dose based upon signal duration.

Keywords: Cdk8-Kinase module; D. melanogaster; Notch signaling; degradation; developmental biology; enhancer; haploinsufficiency; transcription factor binding sites.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Drosophila
  • Drosophila Proteins / genetics*
  • Enhancer Elements, Genetic / genetics*
  • Haploinsufficiency / genetics*
  • Models, Genetic*
  • Models, Theoretical*
  • Phenotype
  • Receptors, Notch / genetics*

Substances

  • Drosophila Proteins
  • N protein, Drosophila
  • Receptors, Notch