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Sequence-derived structural features driving proteolytic processing.
Belushkin AA, Vinogradov DV, Gelfand MS, Osterman AL, Cieplak P, Kazanov MD. Belushkin AA, et al. Among authors: osterman al. Proteomics. 2014 Jan;14(1):42-50. doi: 10.1002/pmic.201300416. Epub 2013 Dec 11. Proteomics. 2014. PMID: 24227478 Free PMC article.
PMAP: databases for analyzing proteolytic events and pathways.
Igarashi Y, Heureux E, Doctor KS, Talwar P, Gramatikova S, Gramatikoff K, Zhang Y, Blinov M, Ibragimova SS, Boyd S, Ratnikov B, Cieplak P, Godzik A, Smith JW, Osterman AL, Eroshkin AM. Igarashi Y, et al. Among authors: osterman al. Nucleic Acids Res. 2009 Jan;37(Database issue):D611-8. doi: 10.1093/nar/gkn683. Epub 2008 Oct 8. Nucleic Acids Res. 2009. PMID: 18842634 Free PMC article.
A novel class of modular transporters for vitamins in prokaryotes.
Rodionov DA, Hebbeln P, Eudes A, ter Beek J, Rodionova IA, Erkens GB, Slotboom DJ, Gelfand MS, Osterman AL, Hanson AD, Eitinger T. Rodionov DA, et al. Among authors: osterman al. J Bacteriol. 2009 Jan;191(1):42-51. doi: 10.1128/JB.01208-08. Epub 2008 Oct 17. J Bacteriol. 2009. PMID: 18931129 Free PMC article.
Structural determinants of limited proteolysis.
Kazanov MD, Igarashi Y, Eroshkin AM, Cieplak P, Ratnikov B, Zhang Y, Li Z, Godzik A, Osterman AL, Smith JW. Kazanov MD, et al. Among authors: osterman al. J Proteome Res. 2011 Aug 5;10(8):3642-51. doi: 10.1021/pr200271w. Epub 2011 Jul 8. J Proteome Res. 2011. PMID: 21682278 Free PMC article.
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.
Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS. Rodionov DA, et al. Among authors: osterman al. BMC Genomics. 2011 Jun 15;12 Suppl 1(Suppl 1):S3. doi: 10.1186/1471-2164-12-S1-S3. BMC Genomics. 2011. PMID: 21810205 Free PMC article.
Glutamine versus ammonia utilization in the NAD synthetase family.
De Ingeniis J, Kazanov MD, Shatalin K, Gelfand MS, Osterman AL, Sorci L. De Ingeniis J, et al. Among authors: osterman al. PLoS One. 2012;7(6):e39115. doi: 10.1371/journal.pone.0039115. Epub 2012 Jun 15. PLoS One. 2012. PMID: 22720044 Free PMC article.
Basis for substrate recognition and distinction by matrix metalloproteinases.
Ratnikov BI, Cieplak P, Gramatikoff K, Pierce J, Eroshkin A, Igarashi Y, Kazanov M, Sun Q, Godzik A, Osterman A, Stec B, Strongin A, Smith JW. Ratnikov BI, et al. Proc Natl Acad Sci U S A. 2014 Oct 7;111(40):E4148-55. doi: 10.1073/pnas.1406134111. Epub 2014 Sep 22. Proc Natl Acad Sci U S A. 2014. PMID: 25246591 Free PMC article.
275 results