Pagni M - Search Results

1

Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis.

Tran VDT, Moretti S, Coste AT, Amorim-Vaz S, Sanglard D, Pagni M. Tran VDT, et al. Among authors: pagni m. Bioinformatics. 2019 Jul 1;35(13):2258-2266. doi: 10.1093/bioinformatics/bty929. Bioinformatics. 2019. PMID: 30445518 Free PMC article.

2

Dotlet: diagonal plots in a web browser.

Junier T, Pagni M. Junier T, et al. Among authors: pagni m. Bioinformatics. 2000 Feb;16(2):178-9. doi: 10.1093/bioinformatics/16.2.178. Bioinformatics. 2000. PMID: 10842741

3

mmsearch: a motif arrangement language and search program.

Junier T, Pagni M, Bucher P. Junier T, et al. Among authors: pagni m. Bioinformatics. 2001 Dec;17(12):1234-5. doi: 10.1093/bioinformatics/17.12.1234. Bioinformatics. 2001. PMID: 11751236

4

Comparative genomics suggests that the fungal pathogen pneumocystis is an obligate parasite scavenging amino acids from its host's lungs.

Hauser PM, Burdet FX, Cissé OH, Keller L, Taffé P, Sanglard D, Pagni M. Hauser PM, et al. Among authors: pagni m. PLoS One. 2010 Dec 20;5(12):e15152. doi: 10.1371/journal.pone.0015152. PLoS One. 2010. PMID: 21188143 Free PMC article.

5

Reconciliation of metabolites and biochemical reactions for metabolic networks.

Bernard T, Bridge A, Morgat A, Moretti S, Xenarios I, Pagni M. Bernard T, et al. Among authors: pagni m. Brief Bioinform. 2014 Jan;15(1):123-35. doi: 10.1093/bib/bbs058. Epub 2012 Nov 19. Brief Bioinform. 2014. PMID: 23172809 Free PMC article. Review.

6

MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks.

Ganter M, Bernard T, Moretti S, Stelling J, Pagni M. Ganter M, et al. Among authors: pagni m. Bioinformatics. 2013 Mar 15;29(6):815-6. doi: 10.1093/bioinformatics/btt036. Epub 2013 Jan 28. Bioinformatics. 2013. PMID: 23357920 Free PMC article.

7

pfsearchV3: a code acceleration and heuristic to search PROSITE profiles.

Schuepbach T, Pagni M, Bridge A, Bougueleret L, Xenarios I, Cerutti L. Schuepbach T, et al. Among authors: pagni m. Bioinformatics. 2013 May 1;29(9):1215-7. doi: 10.1093/bioinformatics/btt129. Epub 2013 Mar 16. Bioinformatics. 2013. PMID: 23505298 Free PMC article.

8

Density-based hierarchical clustering of pyro-sequences on a large scale--the case of fungal ITS1.

Pagni M, Niculita-Hirzel H, Pellissier L, Dubuis A, Xenarios I, Guisan A, Sanders IR, Goudet J, Guex N. Pagni M, et al. Bioinformatics. 2013 May 15;29(10):1268-74. doi: 10.1093/bioinformatics/btt149. Epub 2013 Mar 28. Bioinformatics. 2013. PMID: 23539304 Free PMC article.

9

RNA Enrichment Method for Quantitative Transcriptional Analysis of Pathogens In Vivo Applied to the Fungus Candida albicans.

Amorim-Vaz S, Tran Vdu T, Pradervand S, Pagni M, Coste AT, Sanglard D. Amorim-Vaz S, et al. Among authors: pagni m. mBio. 2015 Sep 22;6(5):e00942-15. doi: 10.1128/mBio.00942-15. mBio. 2015. PMID: 26396240 Free PMC article.

10

MetaNetX/MNXref--reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks.

Moretti S, Martin O, Van Du Tran T, Bridge A, Morgat A, Pagni M. Moretti S, et al. Among authors: pagni m. Nucleic Acids Res. 2016 Jan 4;44(D1):D523-6. doi: 10.1093/nar/gkv1117. Epub 2015 Nov 2. Nucleic Acids Res. 2016. PMID: 26527720 Free PMC article.

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