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A proposed framework for the description of plant metabolomics experiments and their results.
Jenkins H, Hardy N, Beckmann M, Draper J, Smith AR, Taylor J, Fiehn O, Goodacre R, Bino RJ, Hall R, Kopka J, Lane GA, Lange BM, Liu JR, Mendes P, Nikolau BJ, Oliver SG, Paton NW, Rhee S, Roessner-Tunali U, Saito K, Smedsgaard J, Sumner LW, Wang T, Walsh S, Wurtele ES, Kell DB. Jenkins H, et al. Among authors: paton nw. Nat Biotechnol. 2004 Dec;22(12):1601-6. doi: 10.1038/nbt1041. Nat Biotechnol. 2004. PMID: 15583675
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.
Jones AR, Miller M, Aebersold R, Apweiler R, Ball CA, Brazma A, Degreef J, Hardy N, Hermjakob H, Hubbard SJ, Hussey P, Igra M, Jenkins H, Julian RK Jr, Laursen K, Oliver SG, Paton NW, Sansone SA, Sarkans U, Stoeckert CJ Jr, Taylor CF, Whetzel PL, White JA, Spellman P, Pizarro A. Jones AR, et al. Among authors: paton nw. Nat Biotechnol. 2007 Oct;25(10):1127-33. doi: 10.1038/nbt1347. Nat Biotechnol. 2007. PMID: 17921998
A systematic approach to modeling, capturing, and disseminating proteomics experimental data.
Taylor CF, Paton NW, Garwood KL, Kirby PD, Stead DA, Yin Z, Deutsch EW, Selway L, Walker J, Riba-Garcia I, Mohammed S, Deery MJ, Howard JA, Dunkley T, Aebersold R, Kell DB, Lilley KS, Roepstorff P, Yates JR 3rd, Brass A, Brown AJ, Cash P, Gaskell SJ, Hubbard SJ, Oliver SG. Taylor CF, et al. Among authors: paton nw. Nat Biotechnol. 2003 Mar;21(3):247-54. doi: 10.1038/nbt0303-247. Nat Biotechnol. 2003. PMID: 12610571
Pedro: a configurable data entry tool for XML.
Garwood KL, Taylor CF, Runte KJ, Brass A, Oliver SG, Paton NW. Garwood KL, et al. Among authors: paton nw. Bioinformatics. 2004 Oct 12;20(15):2463-5. doi: 10.1093/bioinformatics/bth251. Epub 2004 Apr 8. Bioinformatics. 2004. PMID: 15073025
A common open representation of mass spectrometry data and its application to proteomics research.
Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R. Pedrioli PG, et al. Among authors: paton nw. Nat Biotechnol. 2004 Nov;22(11):1459-66. doi: 10.1038/nbt1031. Nat Biotechnol. 2004. PMID: 15529173
e-Fungi: a data resource for comparative analysis of fungal genomes.
Hedeler C, Wong HM, Cornell MJ, Alam I, Soanes DM, Rattray M, Hubbard SJ, Talbot NJ, Oliver SG, Paton NW. Hedeler C, et al. Among authors: paton nw. BMC Genomics. 2007 Nov 20;8:426. doi: 10.1186/1471-2164-8-426. BMC Genomics. 2007. PMID: 18028535 Free PMC article.
49 results