A metabolite binding protein moonlights as a bile-responsive chaperone

EMBO J. 2020 Oct 15;39(20):e104231. doi: 10.15252/embj.2019104231. Epub 2020 Sep 3.

Abstract

Bile salts are secreted into the gastrointestinal tract to aid in the absorption of lipids. In addition, bile salts show potent antimicrobial activity in part by mediating bacterial protein unfolding and aggregation. Here, using a protein folding sensor, we made the surprising discovery that the Escherichia coli periplasmic glycerol-3-phosphate (G3P)-binding protein UgpB can serve, in the absence of its substrate, as a potent molecular chaperone that exhibits anti-aggregation activity against bile salt-induced protein aggregation. The substrate G3P, which is known to accumulate in the later compartments of the digestive system, triggers a functional switch between UgpB's activity as a molecular chaperone and its activity as a G3P transporter. A UgpB mutant unable to bind G3P is constitutively active as a chaperone, and its crystal structure shows that it contains a deep surface groove absent in the G3P-bound wild-type UgpB. Our work illustrates how evolution may be able to convert threats into signals that first activate and then inactivate a chaperone at the protein level in a manner that bypasses the need for ATP.

Keywords: chaperone; protein folding.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ampicillin / pharmacology
  • Bile / metabolism*
  • Carrier Proteins / chemistry*
  • Carrier Proteins / genetics
  • Carrier Proteins / metabolism*
  • Circular Dichroism
  • Crystallography, X-Ray
  • DNA Transposable Elements / genetics
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / chemistry*
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Gene Deletion
  • Glycerophosphates / metabolism*
  • High-Throughput Nucleotide Sequencing
  • Hydrogen-Ion Concentration
  • Molecular Chaperones / chemistry
  • Molecular Chaperones / genetics
  • Molecular Chaperones / metabolism*
  • Molecular Conformation
  • Molecular Docking Simulation
  • Mutation
  • Protein Binding
  • Protein Conformation
  • Protein Folding
  • Proteome / metabolism

Substances

  • Carrier Proteins
  • DNA Transposable Elements
  • Escherichia coli Proteins
  • Glycerophosphates
  • Molecular Chaperones
  • Proteome
  • UgpB protein, E coli
  • Ampicillin