Pavlidis P - Search Results

1

SweeD: likelihood-based detection of selective sweeps in thousands of genomes.

Pavlidis P, Živkovic D, Stamatakis A, Alachiotis N. Pavlidis P, et al. Mol Biol Evol. 2013 Sep;30(9):2224-34. doi: 10.1093/molbev/mst112. Epub 2013 Jun 18. Mol Biol Evol. 2013. PMID: 23777627 Free PMC article.

2

OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets.

Alachiotis N, Stamatakis A, Pavlidis P. Alachiotis N, et al. Among authors: pavlidis p. Bioinformatics. 2012 Sep 1;28(17):2274-5. doi: 10.1093/bioinformatics/bts419. Epub 2012 Jul 3. Bioinformatics. 2012. PMID: 22760304

3

A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans.

Pavlidis P, Jensen JD, Stephan W, Stamatakis A. Pavlidis P, et al. Mol Biol Evol. 2012 Oct;29(10):3237-48. doi: 10.1093/molbev/mss136. Epub 2012 May 21. Mol Biol Evol. 2012. PMID: 22617950

4

ChromatoGate: A Tool for Detecting Base Mis-Calls in Multiple Sequence Alignments by Semi-Automatic Chromatogram Inspection.

Alachiotis N, Vogiatzi E, Pavlidis P, Stamatakis A. Alachiotis N, et al. Among authors: pavlidis p. Comput Struct Biotechnol J. 2013 May 8;6:e201303001. doi: 10.5936/csbj.201303001. eCollection 2013. Comput Struct Biotechnol J. 2013. PMID: 24688709 Free PMC article.

5

Scalable linkage-disequilibrium-based selective sweep detection: a performance guide.

Alachiotis N, Pavlidis P. Alachiotis N, et al. Among authors: pavlidis p. Gigascience. 2016 Feb 8;5:7. doi: 10.1186/s13742-016-0114-9. eCollection 2016. Gigascience. 2016. PMID: 26862394 Free PMC article.

6

Detecting Positive Selection in Populations Using Genetic Data.

Koropoulis A, Alachiotis N, Pavlidis P. Koropoulis A, et al. Among authors: pavlidis p. Methods Mol Biol. 2020;2090:87-123. doi: 10.1007/978-1-0716-0199-0_5. Methods Mol Biol. 2020. PMID: 31975165

7

Phylogenetic Analysis of SARS-CoV-2 Data Is Difficult.

Morel B, Barbera P, Czech L, Bettisworth B, Hübner L, Lutteropp S, Serdari D, Kostaki EG, Mamais I, Kozlov AM, Pavlidis P, Paraskevis D, Stamatakis A. Morel B, et al. Among authors: pavlidis p. Mol Biol Evol. 2021 May 4;38(5):1777-1791. doi: 10.1093/molbev/msaa314. Mol Biol Evol. 2021. PMID: 33316067 Free PMC article.

8

A general species delimitation method with applications to phylogenetic placements.

Zhang J, Kapli P, Pavlidis P, Stamatakis A. Zhang J, et al. Among authors: pavlidis p. Bioinformatics. 2013 Nov 15;29(22):2869-76. doi: 10.1093/bioinformatics/btt499. Epub 2013 Aug 29. Bioinformatics. 2013. PMID: 23990417 Free PMC article.

9

RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors.

Alachiotis N, Pavlidis P. Alachiotis N, et al. Among authors: pavlidis p. Commun Biol. 2018 Jun 27;1:79. doi: 10.1038/s42003-018-0085-8. eCollection 2018. Commun Biol. 2018. PMID: 30271960 Free PMC article.

10

quickLD: An efficient software for linkage disequilibrium analyses.

Theodoris C, Low TM, Pavlidis P, Alachiotis N. Theodoris C, et al. Among authors: pavlidis p. Mol Ecol Resour. 2021 Oct;21(7):2580-2587. doi: 10.1111/1755-0998.13438. Epub 2021 Jun 19. Mol Ecol Resour. 2021. PMID: 34062051 Free PMC article.

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