Pyysalo S - Search Results

1

Event extraction for systems biology by text mining the literature.

Ananiadou S, Pyysalo S, Tsujii J, Kell DB. Ananiadou S, et al. Among authors: pyysalo s. Trends Biotechnol. 2010 Jul;28(7):381-90. doi: 10.1016/j.tibtech.2010.04.005. Epub 2010 Jun 1. Trends Biotechnol. 2010. PMID: 20570001 Review.

2

Event extraction across multiple levels of biological organization.

Pyysalo S, Ohta T, Miwa M, Cho HC, Tsujii J, Ananiadou S. Pyysalo S, et al. Bioinformatics. 2012 Sep 15;28(18):i575-i581. doi: 10.1093/bioinformatics/bts407. Bioinformatics. 2012. PMID: 22962484 Free PMC article.

3

Complex event extraction at PubMed scale.

Björne J, Ginter F, Pyysalo S, Tsujii J, Salakoski T. Björne J, et al. Among authors: pyysalo s. Bioinformatics. 2010 Jun 15;26(12):i382-90. doi: 10.1093/bioinformatics/btq180. Bioinformatics. 2010. PMID: 20529932 Free PMC article.

4

Named entity recognition for bacterial Type IV secretion systems.

Ananiadou S, Sullivan D, Black W, Levow GA, Gillespie JJ, Mao C, Pyysalo S, Kolluru B, Tsujii J, Sobral B. Ananiadou S, et al. Among authors: pyysalo s. PLoS One. 2011 Mar 29;6(3):e14780. doi: 10.1371/journal.pone.0014780. PLoS One. 2011. PMID: 21468321 Free PMC article.

5

U-Compare bio-event meta-service: compatible BioNLP event extraction services.

Kano Y, Björne J, Ginter F, Salakoski T, Buyko E, Hahn U, Cohen KB, Verspoor K, Roeder C, Hunter LE, Kilicoglu H, Bergler S, Van Landeghem S, Van Parys T, Van de Peer Y, Miwa M, Ananiadou S, Neves M, Pascual-Montano A, Özgür A, Radev DR, Riedel S, Sætre R, Chun HW, Kim JD, Pyysalo S, Ohta T, Tsujii J. Kano Y, et al. Among authors: pyysalo s. BMC Bioinformatics. 2011 Dec 18;12:481. doi: 10.1186/1471-2105-12-481. BMC Bioinformatics. 2011. PMID: 22177292 Free PMC article.

6

BioCause: Annotating and analysing causality in the biomedical domain.

Mihăilă C, Ohta T, Pyysalo S, Ananiadou S. Mihăilă C, et al. Among authors: pyysalo s. BMC Bioinformatics. 2013 Jan 16;14:2. doi: 10.1186/1471-2105-14-2. BMC Bioinformatics. 2013. PMID: 23323613 Free PMC article.

7

Wide coverage biomedical event extraction using multiple partially overlapping corpora.

Miwa M, Pyysalo S, Ohta T, Ananiadou S. Miwa M, et al. Among authors: pyysalo s. BMC Bioinformatics. 2013 Jun 3;14:175. doi: 10.1186/1471-2105-14-175. BMC Bioinformatics. 2013. PMID: 23731785 Free PMC article.

8

A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text.

Miwa M, Ohta T, Rak R, Rowley A, Kell DB, Pyysalo S, Ananiadou S. Miwa M, et al. Among authors: pyysalo s. Bioinformatics. 2013 Jul 1;29(13):i44-52. doi: 10.1093/bioinformatics/btt227. Bioinformatics. 2013. PMID: 23813008 Free PMC article.

9

Anatomical entity mention recognition at literature scale.

Pyysalo S, Ananiadou S. Pyysalo S, et al. Bioinformatics. 2014 Mar 15;30(6):868-75. doi: 10.1093/bioinformatics/btt580. Epub 2013 Oct 25. Bioinformatics. 2014. PMID: 24162468 Free PMC article.

10

A re-evaluation of biomedical named entity-term relations.

Ohta T, Pyysalo S, Kim JD, Tsujii J. Ohta T, et al. Among authors: pyysalo s. J Bioinform Comput Biol. 2010 Oct;8(5):917-28. doi: 10.1142/s0219720010005014. J Bioinform Comput Biol. 2010. PMID: 20981895

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