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Impact of sequencing depth in ChIP-seq experiments.
Jung YL, Luquette LJ, Ho JW, Ferrari F, Tolstorukov M, Minoda A, Issner R, Epstein CB, Karpen GH, Kuroda MI, Park PJ. Jung YL, et al. Nucleic Acids Res. 2014 May;42(9):e74. doi: 10.1093/nar/gku178. Epub 2014 Mar 5. Nucleic Acids Res. 2014. PMID: 24598259 Free PMC article.
Landscape of somatic retrotransposition in human cancers.
Lee E, Iskow R, Yang L, Gokcumen O, Haseley P, Luquette LJ 3rd, Lohr JG, Harris CC, Ding L, Wilson RK, Wheeler DA, Gibbs RA, Kucherlapati R, Lee C, Kharchenko PV, Park PJ; Cancer Genome Atlas Research Network. Lee E, et al. Science. 2012 Aug 24;337(6097):967-71. doi: 10.1126/science.1222077. Epub 2012 Jun 28. Science. 2012. PMID: 22745252 Free PMC article.
CpG islands recruit a histone H3 lysine 36 demethylase.
Blackledge NP, Zhou JC, Tolstorukov MY, Farcas AM, Park PJ, Klose RJ. Blackledge NP, et al. Mol Cell. 2010 Apr 23;38(2):179-90. doi: 10.1016/j.molcel.2010.04.009. Mol Cell. 2010. PMID: 20417597 Free PMC article.