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JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.
Nucleic Acids Res. 2022 Jan 7;50(D1):D165-D173. doi: 10.1093/nar/gkab1113.
Nucleic Acids Res. 2022.
PMID: 34850907
Free PMC article.
BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences.
Khan A, Riudavets Puig R, Boddie P, Mathelier A.
Khan A, et al. Among authors: riudavets puig r.
Bioinformatics. 2021 Jul 12;37(11):1607-1609. doi: 10.1093/bioinformatics/btaa928.
Bioinformatics. 2021.
PMID: 33135764
Free PMC article.
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UniBind: maps of high-confidence direct TF-DNA interactions across nine species.
Puig RR, Boddie P, Khan A, Castro-Mondragon JA, Mathelier A.
Puig RR, et al.
BMC Genomics. 2021 Jun 26;22(1):482. doi: 10.1186/s12864-021-07760-6.
BMC Genomics. 2021.
PMID: 34174819
Free PMC article.
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Network Building with the Cytoscape BioGateway App Explained in Five Use Cases.
Puig RR, Holmås S, Mironov V, Kuiper M.
Puig RR, et al.
Curr Protoc Bioinformatics. 2020 Dec;72(1):e106. doi: 10.1002/cpbi.106.
Curr Protoc Bioinformatics. 2020.
PMID: 32986267
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JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles.
Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Chèneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A.
Rauluseviciute I, et al. Among authors: riudavets puig r.
Nucleic Acids Res. 2024 Jan 5;52(D1):D174-D182. doi: 10.1093/nar/gkad1059.
Nucleic Acids Res. 2024.
PMID: 37962376
Free PMC article.
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