Raghav SK - Search Results

1

A yeast one-hybrid and microfluidics-based pipeline to map mammalian gene regulatory networks.

Gubelmann C, Waszak SM, Isakova A, Holcombe W, Hens K, Iagovitina A, Feuz JD, Raghav SK, Simicevic J, Deplancke B. Gubelmann C, et al. Among authors: raghav sk. Mol Syst Biol. 2013 Aug 6;9:682. doi: 10.1038/msb.2013.38. Mol Syst Biol. 2013. PMID: 23917988 Free PMC article.

2

Integrative genomics identifies the corepressor SMRT as a gatekeeper of adipogenesis through the transcription factors C/EBPβ and KAISO.

Raghav SK, Waszak SM, Krier I, Gubelmann C, Isakova A, Mikkelsen TS, Deplancke B. Raghav SK, et al. Mol Cell. 2012 May 11;46(3):335-50. doi: 10.1016/j.molcel.2012.03.017. Epub 2012 Apr 19. Mol Cell. 2012. PMID: 22521691 Free article.

3

Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network.

Gubelmann C, Schwalie PC, Raghav SK, Röder E, Delessa T, Kiehlmann E, Waszak SM, Corsinotti A, Udin G, Holcombe W, Rudofsky G, Trono D, Wolfrum C, Deplancke B. Gubelmann C, et al. Among authors: raghav sk. Elife. 2014 Aug 27;3:e03346. doi: 10.7554/eLife.03346. Elife. 2014. PMID: 25163748 Free PMC article.

4

Genome-wide profiling of DNA-binding proteins using barcode-based multiplex Solexa sequencing.

Raghav SK, Deplancke B. Raghav SK, et al. Methods Mol Biol. 2012;786:247-62. doi: 10.1007/978-1-61779-292-2_15. Methods Mol Biol. 2012. PMID: 21938631

5

Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics.

Simicevic J, Schmid AW, Gilardoni PA, Zoller B, Raghav SK, Krier I, Gubelmann C, Lisacek F, Naef F, Moniatte M, Deplancke B. Simicevic J, et al. Among authors: raghav sk. Nat Methods. 2013 Jun;10(6):570-6. doi: 10.1038/nmeth.2441. Epub 2013 Apr 14. Nat Methods. 2013. PMID: 23584187 Free article.

6

ZFP30 promotes adipogenesis through the KAP1-mediated activation of a retrotransposon-derived Pparg2 enhancer.

Chen W, Schwalie PC, Pankevich EV, Gubelmann C, Raghav SK, Dainese R, Cassano M, Imbeault M, Jang SM, Russeil J, Delessa T, Duc J, Trono D, Wolfrum C, Deplancke B. Chen W, et al. Among authors: raghav sk. Nat Commun. 2019 Apr 18;10(1):1809. doi: 10.1038/s41467-019-09803-9. Nat Commun. 2019. PMID: 31000713 Free PMC article.

7

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data.

Waszak SM, Kilpinen H, Gschwind AR, Orioli A, Raghav SK, Witwicki RM, Migliavacca E, Yurovsky A, Lappalainen T, Hernandez N, Reymond A, Dermitzakis ET, Deplancke B. Waszak SM, et al. Among authors: raghav sk. Bioinformatics. 2014 Jan 15;30(2):165-71. doi: 10.1093/bioinformatics/btt667. Epub 2013 Nov 18. Bioinformatics. 2014. PMID: 24255646

8

Population Variation and Genetic Control of Modular Chromatin Architecture in Humans.

Waszak SM, Delaneau O, Gschwind AR, Kilpinen H, Raghav SK, Witwicki RM, Orioli A, Wiederkehr M, Panousis NI, Yurovsky A, Romano-Palumbo L, Planchon A, Bielser D, Padioleau I, Udin G, Thurnheer S, Hacker D, Hernandez N, Reymond A, Deplancke B, Dermitzakis ET. Waszak SM, et al. Among authors: raghav sk. Cell. 2015 Aug 27;162(5):1039-50. doi: 10.1016/j.cell.2015.08.001. Epub 2015 Aug 20. Cell. 2015. PMID: 26300124 Free article.

9

Transcriptional regulatory logic of the diurnal cycle in the mouse liver.

Sobel JA, Krier I, Andersin T, Raghav S, Canella D, Gilardi F, Kalantzi AS, Rey G, Weger B, Gachon F, Dal Peraro M, Hernandez N, Schibler U, Deplancke B, Naef F; CycliX consortium. Sobel JA, et al. PLoS Biol. 2017 Apr 17;15(4):e2001069. doi: 10.1371/journal.pbio.2001069. eCollection 2017 Apr. PLoS Biol. 2017. PMID: 28414715 Free PMC article.

10

Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription.

Kilpinen H, Waszak SM, Gschwind AR, Raghav SK, Witwicki RM, Orioli A, Migliavacca E, Wiederkehr M, Gutierrez-Arcelus M, Panousis NI, Yurovsky A, Lappalainen T, Romano-Palumbo L, Planchon A, Bielser D, Bryois J, Padioleau I, Udin G, Thurnheer S, Hacker D, Core LJ, Lis JT, Hernandez N, Reymond A, Deplancke B, Dermitzakis ET. Kilpinen H, et al. Among authors: raghav sk. Science. 2013 Nov 8;342(6159):744-7. doi: 10.1126/science.1242463. Epub 2013 Oct 17. Science. 2013. PMID: 24136355 Free PMC article.

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