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De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics.
Adamidi C, Wang Y, Gruen D, Mastrobuoni G, You X, Tolle D, Dodt M, Mackowiak SD, Gogol-Doering A, Oenal P, Rybak A, Ross E, Sánchez Alvarado A, Kempa S, Dieterich C, Rajewsky N, Chen W. Adamidi C, et al. Among authors: rajewsky n. Genome Res. 2011 Jul;21(7):1193-200. doi: 10.1101/gr.113779.110. Epub 2011 May 2. Genome Res. 2011. PMID: 21536722 Free PMC article.
Discovering microRNAs from deep sequencing data using miRDeep.
Friedländer MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N. Friedländer MR, et al. Among authors: rajewsky n. Nat Biotechnol. 2008 Apr;26(4):407-15. doi: 10.1038/nbt1394. Nat Biotechnol. 2008. PMID: 18392026
High-resolution profiling and discovery of planarian small RNAs.
Friedländer MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sánchez Alvarado A, Kim JK, Rajewsky N. Friedländer MR, et al. Among authors: rajewsky n. Proc Natl Acad Sci U S A. 2009 Jul 14;106(28):11546-51. doi: 10.1073/pnas.0905222106. Epub 2009 Jun 29. Proc Natl Acad Sci U S A. 2009. PMID: 19564616 Free PMC article.
Deciphering the porcine intestinal microRNA transcriptome.
Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R. Sharbati S, et al. Among authors: rajewsky n. BMC Genomics. 2010 Apr 30;11:275. doi: 10.1186/1471-2164-11-275. BMC Genomics. 2010. PMID: 20433717 Free PMC article.
The landscape of C. elegans 3'UTRs.
Mangone M, Manoharan AP, Thierry-Mieg D, Thierry-Mieg J, Han T, Mackowiak SD, Mis E, Zegar C, Gutwein MR, Khivansara V, Attie O, Chen K, Salehi-Ashtiani K, Vidal M, Harkins TT, Bouffard P, Suzuki Y, Sugano S, Kohara Y, Rajewsky N, Piano F, Gunsalus KC, Kim JK. Mangone M, et al. Among authors: rajewsky n. Science. 2010 Jul 23;329(5990):432-5. doi: 10.1126/science.1191244. Epub 2010 Jun 3. Science. 2010. PMID: 20522740 Free PMC article.
doRiNA: a database of RNA interactions in post-transcriptional regulation.
Anders G, Mackowiak SD, Jens M, Maaskola J, Kuntzagk A, Rajewsky N, Landthaler M, Dieterich C. Anders G, et al. Among authors: rajewsky n. Nucleic Acids Res. 2012 Jan;40(Database issue):D180-6. doi: 10.1093/nar/gkr1007. Epub 2011 Nov 15. Nucleic Acids Res. 2012. PMID: 22086949 Free PMC article.
155 results