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CytoPy: An autonomous cytometry analysis framework.
Burton RJ, Ahmed R, Cuff SM, Baker S, Artemiou A, Eberl M. Burton RJ, et al. Among authors: ahmed r. PLoS Comput Biol. 2021 Jun 8;17(6):e1009071. doi: 10.1371/journal.pcbi.1009071. eCollection 2021 Jun. PLoS Comput Biol. 2021. PMID: 34101722 Free PMC article.
CD57+ Memory T Cells Proliferate In Vivo.
Ahmed R, Miners KL, Lahoz-Beneytez J, Jones RE, Roger L, Baboonian C, Zhang Y, Wang ECY, Hellerstein MK, McCune JM, Baird DM, Price DA, Macallan DC, Asquith B, Ladell K. Ahmed R, et al. Cell Rep. 2020 Dec 15;33(11):108501. doi: 10.1016/j.celrep.2020.108501. Cell Rep. 2020. PMID: 33326780 Free PMC article.
Human TSCM cell dynamics in vivo are compatible with long-lived immunological memory and stemness.
Costa Del Amo P, Lahoz-Beneytez J, Boelen L, Ahmed R, Miners KL, Zhang Y, Roger L, Jones RE, Marraco SAF, Speiser DE, Baird DM, Price DA, Ladell K, Macallan D, Asquith B. Costa Del Amo P, et al. Among authors: ahmed r. PLoS Biol. 2018 Jun 22;16(6):e2005523. doi: 10.1371/journal.pbio.2005523. eCollection 2018 Jun. PLoS Biol. 2018. PMID: 29933397 Free PMC article.
Reconciling Estimates of Cell Proliferation from Stable Isotope Labeling Experiments.
Ahmed R, Westera L, Drylewicz J, Elemans M, Zhang Y, Kelly E, Reljic R, Tesselaar K, de Boer RJ, Macallan DC, Borghans JA, Asquith B. Ahmed R, et al. PLoS Comput Biol. 2015 Oct 5;11(10):e1004355. doi: 10.1371/journal.pcbi.1004355. eCollection 2015 Oct. PLoS Comput Biol. 2015. PMID: 26437372 Free PMC article.
Human Stem Cell-like Memory T Cells Are Maintained in a State of Dynamic Flux.
Ahmed R, Roger L, Costa Del Amo P, Miners KL, Jones RE, Boelen L, Fali T, Elemans M, Zhang Y, Appay V, Baird DM, Asquith B, Price DA, Macallan DC, Ladell K. Ahmed R, et al. Cell Rep. 2016 Dec 13;17(11):2811-2818. doi: 10.1016/j.celrep.2016.11.037. Cell Rep. 2016. PMID: 27974195 Free PMC article.