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rivas g[Author]
(346 results)?
Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis.
Cell Stem Cell. 2021 Mar 4;28(3):472-487.e7. doi: 10.1016/j.stem.2020.11.015. Epub 2020 Dec 21.
Cell Stem Cell. 2021.
PMID: 33352111
Free PMC article.
Structural and non-coding variants increase the diagnostic yield of clinical whole genome sequencing for rare diseases.
Pagnamenta AT, Camps C, Giacopuzzi E, Taylor JM, Hashim M, Calpena E, Kaisaki PJ, Hashimoto A, Yu J, Sanders E, Schwessinger R, Hughes JR, Lunter G, Dreau H, Ferla M, Lange L, Kesim Y, Ragoussis V, Vavoulis DV, Allroggen H, Ansorge O, Babbs C, Banka S, Baños-Piñero B, Beeson D, Ben-Ami T, Bennett DL, Bento C, Blair E, Brasch-Andersen C, Bull KR, Cario H, Cilliers D, Conti V, Davies EG, Dhalla F, Dacal BD, Dong Y, Dunford JE, Guerrini R, Harris AL, Hartley J, Hollander G, Javaid K, Kane M, Kelly D, Kelly D, Knight SJL, Kreins AY, Kvikstad EM, Langman CB, Lester T, Lines KE, Lord SR, Lu X, Mansour S, Manzur A, Maroofian R, Marsden B, Mason J, McGowan SJ, Mei D, Mlcochova H, Murakami Y, Németh AH, Okoli S, Ormondroyd E, Ousager LB, Palace J, Patel SY, Pentony MM, Pugh C, Rad A, Ramesh A, Riva SG, Roberts I, Roy N, Salminen O, Schilling KD, Scott C, Sen A, Smith C, Stevenson M, Thakker RV, Twigg SRF, Uhlig HH, van Wijk R, Vona B, Wall S, Wang J, Watkins H, Zak J, Schuh AH, Kini U, Wilkie AOM, Popitsch N, Taylor JC.
Pagnamenta AT, et al. Among authors: riva sg.
Genome Med. 2023 Nov 9;15(1):94. doi: 10.1186/s13073-023-01240-0.
Genome Med. 2023.
PMID: 37946251
Free PMC article.
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GTAC enables parallel genotyping of multiple genomic loci with chromatin accessibility profiling in single cells.
Turkalj S, Jakobsen NA, Groom A, Metzner M, Riva SG, Gür ER, Usukhbayar B, Salazar MA, Hentges LD, Mickute G, Clark K, Sopp P, Davies JOJ, Hughes JR, Vyas P.
Turkalj S, et al. Among authors: riva sg.
Cell Stem Cell. 2023 May 4;30(5):722-740.e11. doi: 10.1016/j.stem.2023.04.012.
Cell Stem Cell. 2023.
PMID: 37146586
Free article.
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MAGNETO: Cell type marker panel generator from single-cell transcriptomic data.
Tangherloni A, Riva SG, Myers B, Buffa FM, Cazzaniga P.
Tangherloni A, et al. Among authors: riva sg.
J Biomed Inform. 2023 Nov;147:104510. doi: 10.1016/j.jbi.2023.104510. Epub 2023 Oct 4.
J Biomed Inform. 2023.
PMID: 37797704
Free article.
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CATCH-UP: A High-Throughput Upstream-Pipeline for Bulk ATAC-Seq and ChIP-Seq Data.
Riva SG, Georgiades E, Gur ER, Baxter M, Hughes JR.
Riva SG, et al.
J Vis Exp. 2023 Sep 22;(199). doi: 10.3791/65633.
J Vis Exp. 2023.
PMID: 37811941
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SMaSH: a scalable, general marker gene identification framework for single-cell RNA-sequencing.
Nelson ME, Riva SG, Cvejic A.
Nelson ME, et al. Among authors: riva sg.
BMC Bioinformatics. 2022 Aug 8;23(1):328. doi: 10.1186/s12859-022-04860-2.
BMC Bioinformatics. 2022.
PMID: 35941549
Free PMC article.
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