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XS: a FASTQ read simulator.
Pratas D, Pinho AJ, Rodrigues JM. Pratas D, et al. Among authors: rodrigues jm. BMC Res Notes. 2014 Jan 16;7:40. doi: 10.1186/1756-0500-7-40. BMC Res Notes. 2014. PMID: 24433564 Free PMC article.
On finding minimal absent words.
Pinho AJ, Ferreira PJ, Garcia SP, Rodrigues JM. Pinho AJ, et al. Among authors: rodrigues jm. BMC Bioinformatics. 2009 May 8;10:137. doi: 10.1186/1471-2105-10-137. BMC Bioinformatics. 2009. PMID: 19426495 Free PMC article.
Minimal absent words in prokaryotic and eukaryotic genomes.
Garcia SP, Pinho AJ, Rodrigues JM, Bastos CA, Ferreira PJ. Garcia SP, et al. Among authors: rodrigues jm. PLoS One. 2011 Jan 31;6(1):e16065. doi: 10.1371/journal.pone.0016065. PLoS One. 2011. PMID: 21386877 Free PMC article.
The breakdown of the word symmetry in the human genome.
Afreixo V, Bastos CA, Garcia SP, Rodrigues JM, Pinho AJ, Ferreira PJ. Afreixo V, et al. Among authors: rodrigues jm. J Theor Biol. 2013 Oct 21;335:153-9. doi: 10.1016/j.jtbi.2013.06.032. Epub 2013 Jul 2. J Theor Biol. 2013. PMID: 23831271
Concentration of inverted repeats along human DNA.
Bastos CAC, Afreixo V, Rodrigues JMOS, Pinho AJ. Bastos CAC, et al. J Integr Bioinform. 2023 Jul 25;20(2):20220052. doi: 10.1515/jib-2022-0052. eCollection 2023 Jun 1. J Integr Bioinform. 2023. PMID: 37486620 Free PMC article.
The exceptional genomic word symmetry along DNA sequences.
Afreixo V, Rodrigues JM, Bastos CA, Silva RM. Afreixo V, et al. Among authors: rodrigues jm. BMC Bioinformatics. 2016 Feb 3;17:59. doi: 10.1186/s12859-016-0905-0. BMC Bioinformatics. 2016. PMID: 26842742 Free PMC article.
226 results