Roth AC - Search Results

1

Algorithm of OMA for large-scale orthology inference.

Roth AC, Gonnet GH, Dessimoz C. Roth AC, et al. BMC Bioinformatics. 2008 Dec 4;9:518. doi: 10.1186/1471-2105-9-518. BMC Bioinformatics. 2008. PMID: 19055798 Free PMC article.

2

Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits.

Dessimoz C, Boeckmann B, Roth AC, Gonnet GH. Dessimoz C, et al. Among authors: roth ac. Nucleic Acids Res. 2006 Jul 11;34(11):3309-16. doi: 10.1093/nar/gkl433. Print 2006. Nucleic Acids Res. 2006. PMID: 16835308 Free PMC article.

3

A role for codon order in translation dynamics.

Cannarozzi G, Schraudolph NN, Faty M, von Rohr P, Friberg MT, Roth AC, Gonnet P, Gonnet G, Barral Y. Cannarozzi G, et al. Among authors: roth ac. Cell. 2010 Apr 16;141(2):355-67. doi: 10.1016/j.cell.2010.02.036. Cell. 2010. PMID: 20403329 Free article.

4

eggNOG v4.0: nested orthology inference across 3686 organisms.

Powell S, Forslund K, Szklarczyk D, Trachana K, Roth A, Huerta-Cepas J, Gabaldón T, Rattei T, Creevey C, Kuhn M, Jensen LJ, von Mering C, Bork P. Powell S, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D231-9. doi: 10.1093/nar/gkt1253. Epub 2013 Dec 1. Nucleic Acids Res. 2014. PMID: 24297252 Free PMC article.

5

Decoding properties of tRNA leave a detectable signal in codon usage bias.

Roth AC. Roth AC. Bioinformatics. 2012 Sep 15;28(18):i340-i348. doi: 10.1093/bioinformatics/bts403. Bioinformatics. 2012. PMID: 22962450 Free PMC article.

6

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.

Szklarczyk D, Morris JH, Cook H, Kuhn M, Wyder S, Simonovic M, Santos A, Doncheva NT, Roth A, Bork P, Jensen LJ, von Mering C. Szklarczyk D, et al. Nucleic Acids Res. 2017 Jan 4;45(D1):D362-D368. doi: 10.1093/nar/gkw937. Epub 2016 Oct 18. Nucleic Acids Res. 2017. PMID: 27924014 Free PMC article.

7

STRING v9.1: protein-protein interaction networks, with increased coverage and integration.

Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, Jensen LJ. Franceschini A, et al. Nucleic Acids Res. 2013 Jan;41(Database issue):D808-15. doi: 10.1093/nar/gks1094. Epub 2012 Nov 29. Nucleic Acids Res. 2013. PMID: 23203871 Free PMC article.

8

Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans.

Kamkina P, Snoek LB, Grossmann J, Volkers RJ, Sterken MG, Daube M, Roschitzki B, Fortes C, Schlapbach R, Roth A, von Mering C, Hengartner MO, Schrimpf SP, Kammenga JE. Kamkina P, et al. Mol Cell Proteomics. 2016 May;15(5):1670-80. doi: 10.1074/mcp.M115.052548. Epub 2016 Mar 4. Mol Cell Proteomics. 2016. PMID: 26944343 Free PMC article.

9

STRING v10: protein-protein interaction networks, integrated over the tree of life.

Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, Simonovic M, Roth A, Santos A, Tsafou KP, Kuhn M, Bork P, Jensen LJ, von Mering C. Szklarczyk D, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D447-52. doi: 10.1093/nar/gku1003. Epub 2014 Oct 28. Nucleic Acids Res. 2015. PMID: 25352553 Free PMC article.

10

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.

Muller J, Szklarczyk D, Julien P, Letunic I, Roth A, Kuhn M, Powell S, von Mering C, Doerks T, Jensen LJ, Bork P. Muller J, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D190-5. doi: 10.1093/nar/gkp951. Epub 2009 Nov 9. Nucleic Acids Res. 2010. PMID: 19900971 Free PMC article.

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