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Contiguously hydrophobic sequences are functionally significant throughout the human exome.
Proc Natl Acad Sci U S A. 2022 Mar 22;119(12):e2116267119. doi: 10.1073/pnas.2116267119. Epub 2022 Mar 16.
Proc Natl Acad Sci U S A. 2022.
PMID: 35294280
Free PMC article.
A global high-density chromatin interaction network reveals functional long-range and trans-chromosomal relationships.
Lohia R, Fox N, Gillis J.
Lohia R, et al.
Genome Biol. 2022 Nov 9;23(1):238. doi: 10.1186/s13059-022-02790-z.
Genome Biol. 2022.
PMID: 36352464
Free PMC article.
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Characterization of intrinsically disordered regions in proteins informed by human genetic diversity.
Ahmed SS, Rifat ZT, Lohia R, Campbell AJ, Dunker AK, Rahman MS, Iqbal S.
Ahmed SS, et al. Among authors: lohia r.
PLoS Comput Biol. 2022 Mar 11;18(3):e1009911. doi: 10.1371/journal.pcbi.1009911. eCollection 2022 Mar.
PLoS Comput Biol. 2022.
PMID: 35275927
Free PMC article.
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Comparative metagenome analysis of an Alaskan glacier.
Choudhari S, Lohia R, Grigoriev A.
Choudhari S, et al. Among authors: lohia r.
J Bioinform Comput Biol. 2014 Apr;12(2):1441003. doi: 10.1142/S0219720014410030. Epub 2014 Mar 6.
J Bioinform Comput Biol. 2014.
PMID: 24712530
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A Streamlined, General Approach for Computing Ligand Binding Free Energies and Its Application to GPCR-Bound Cholesterol.
Salari R, Joseph T, Lohia R, Hénin J, Brannigan G.
Salari R, et al. Among authors: lohia r.
J Chem Theory Comput. 2018 Dec 11;14(12):6560-6573. doi: 10.1021/acs.jctc.8b00447. Epub 2018 Nov 13.
J Chem Theory Comput. 2018.
PMID: 30358394
Free PMC article.
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The blobulator: a webtool for identification and visual exploration of hydrophobic modularity in protein sequences.
Pitman C, Santiago-McRae E, Lohia R, Bassi K, Joseph TT, Hansen MEB, Brannigan G.
Pitman C, et al. Among authors: lohia r.
bioRxiv [Preprint]. 2024 Jan 22:2024.01.15.575761. doi: 10.1101/2024.01.15.575761.
bioRxiv. 2024.
PMID: 38293114
Free PMC article.
Preprint.
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Sequence specificity despite intrinsic disorder: How a disease-associated Val/Met polymorphism rearranges tertiary interactions in a long disordered protein.
Lohia R, Salari R, Brannigan G.
Lohia R, et al.
PLoS Comput Biol. 2019 Oct 18;15(10):e1007390. doi: 10.1371/journal.pcbi.1007390. eCollection 2019 Oct.
PLoS Comput Biol. 2019.
PMID: 31626641
Free PMC article.
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