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2017 1
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2019 1
2021 4
2022 2
2023 5
2024 3

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Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation.
Kolmogorov M, Billingsley KJ, Mastoras M, Meredith M, Monlong J, Lorig-Roach R, Asri M, Alvarez Jerez P, Malik L, Dewan R, Reed X, Genner RM, Daida K, Behera S, Shafin K, Pesout T, Prabakaran J, Carnevali P, Yang J, Rhie A, Scholz SW, Traynor BJ, Miga KH, Jain M, Timp W, Phillippy AM, Chaisson M, Sedlazeck FJ, Blauwendraat C, Paten B. Kolmogorov M, et al. Among authors: behera s. Nat Methods. 2023 Oct;20(10):1483-1492. doi: 10.1038/s41592-023-01993-x. Epub 2023 Sep 14. Nat Methods. 2023. PMID: 37710018
Plant Transcriptome Assembly: Review and Benchmarking.
Behera S, Voshall A, Moriyama EN. Behera S, et al. In: Helder I. N, editor. Bioinformatics [Internet]. Brisbane (AU): Exon Publications; 2021 Mar 20. Chapter 7. In: Helder I. N, editor. Bioinformatics [Internet]. Brisbane (AU): Exon Publications; 2021 Mar 20. Chapter 7. PMID: 33877767 Free Books & Documents. Review.
Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation.
Kolmogorov M, Billingsley KJ, Mastoras M, Meredith M, Monlong J, Lorig-Roach R, Asri M, Jerez PA, Malik L, Dewan R, Reed X, Genner RM, Daida K, Behera S, Shafin K, Pesout T, Prabakaran J, Carnevali P; North American Brain Expression Consortium (NABEC); Yang J, Rhie A, Scholz SW, Traynor BJ, Miga KH, Jain M, Timp W, Phillippy AM, Chaisson M, Sedlazeck FJ, Blauwendraat C, Paten B. Kolmogorov M, et al. Among authors: behera s. bioRxiv [Preprint]. 2023 Apr 5:2023.01.12.523790. doi: 10.1101/2023.01.12.523790. bioRxiv. 2023. PMID: 36711673 Free PMC article. Updated. Preprint.
FixItFelix: improving genomic analysis by fixing reference errors.
Behera S, LeFaive J, Orchard P, Mahmoud M, Paulin LF, Farek J, Soto DC, Parker SCJ, Smith AV, Dennis MY, Zook JM, Sedlazeck FJ. Behera S, et al. Genome Biol. 2023 Feb 21;24(1):31. doi: 10.1186/s13059-023-02863-7. Genome Biol. 2023. PMID: 36810122 Free PMC article.
Divergent evolution of extreme production of variant plant monounsaturated fatty acids.
Gan L, Park K, Chai J, Updike EM, Kim H, Voshall A, Behera S, Yu XH, Cai Y, Zhang C, Wilson MA, Mower JP, Moriyama EN, Zhang C, Kaewsuwan S, Liu Q, Shanklin J, Cahoon EB. Gan L, et al. Among authors: behera s. Proc Natl Acad Sci U S A. 2022 Jul 26;119(30):e2201160119. doi: 10.1073/pnas.2201160119. Epub 2022 Jul 22. Proc Natl Acad Sci U S A. 2022. PMID: 35867834 Free PMC article.
A consensus-based ensemble approach to improve transcriptome assembly.
Voshall A, Behera S, Li X, Yu XH, Kapil K, Deogun JS, Shanklin J, Cahoon EB, Moriyama EN. Voshall A, et al. Among authors: behera s. BMC Bioinformatics. 2021 Oct 21;22(1):513. doi: 10.1186/s12859-021-04434-8. BMC Bioinformatics. 2021. PMID: 34674629 Free PMC article.
Detection of mosaic and population-level structural variants with Sniffles2.
Smolka M, Paulin LF, Grochowski CM, Horner DW, Mahmoud M, Behera S, Kalef-Ezra E, Gandhi M, Hong K, Pehlivan D, Scholz SW, Carvalho CMB, Proukakis C, Sedlazeck FJ. Smolka M, et al. Among authors: behera s. Nat Biotechnol. 2024 Jan 2. doi: 10.1038/s41587-023-02024-y. Online ahead of print. Nat Biotechnol. 2024. PMID: 38168980
16 results